Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1050 ATGTTCCCGCAGAGTTTTAACATTAGTGGCGGTGGTGCCGGGCTTGAACAACTGTTGCAGCCTCATCACTTCCCATCTCCAATGGAACAACAACAACAACGTTCCAGGTGGAAACCCAGCGTCGAGGTGGCACCCAATTGCCCTCGCTGCGCCTCCACCAACACCAAATTCTGTTACTACAACAACTACAGCTTGTCCCAGCCGAGGTACTTCTGCAAAGGCTGCAGGCGATACTGGACCAAAGGCGGCTCTCTCCGCAACGTCCCTGTCGGCGGTGGCTGCCGCAAGAACCGCCGCGGAAAATCGTTGCAGTCGTCGTCGTCGCGGCAACAACGCGCTTCTAGCTTCGTTTCTGGGGACACAGAGTCATCATTTAGTGATGCCCAACAGATTAACAACGGGTCTCGTGATATAGACATGGCTCTCGTGTTTGCAAAATTCTTGAACCCAAAACCAACCACTGGTGAGGATAACAATGGCTCATCTTCGACTTCCAACAATTTTACACCGGAAAGTGTAGAAATTGAGAATGATGCAGTGGTTCAGTCTCAGAATAAGGCTTCATCCGATCCTGTTATTGTAGAGTCTGAGAATTTGAGTTTGGGTGAGATTGATGAGTTGGAGAGGTTATTAGGTGTGTGTGGCGATGAAGATGGTCTTTGGTCTGATGCTACCTTGTCTTCTTCGGTTACTTGGGAACCACCATTGAAGGAGTTGGAATACTCGATGCCGTTGAATGAGGATGATGATGATGCTCAATTGTTACCCATCATCACTTCTGCATCCACAATGATCAGCGACTCTTGCTGGAGTAATTGGAGTTCTTTTGATCTTTCAACCATGGAAGCCTTCTCATCAAGTCCTTCTTAA 870 0.4839 MFPQSFNISGGGAGLEQLLQPHHFPSPMEQQQQRSRWKPSVEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGKSLQSSSSRQQRASSFVSGDTESSFSDAQQINNGSRDIDMALVFAKFLNPKPTTGEDNNGSSSTSNNFTPESVEIENDAVVQSQNKASSDPVIVESENLSLGEIDELERLLGVCGDEDGLWSDATLSSSVTWEPPLKELEYSMPLNEDDDDAQLLPIITSASTMISDSCWSNWSSFDLSTMEAFSSSPS* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1050 289 Pfam Dof domain, zinc finger 45 99 IPR003851 GO:0003677|GO:0006355
Gso6g1050 289 PANTHER DOF ZINC FINGER PROTEIN DOF1.2 23 195 - -
Gso6g1050 289 MobiDBLite consensus disorder prediction 152 171 - -
Gso6g1050 289 MobiDBLite consensus disorder prediction 149 171 - -
Gso6g1050 289 MobiDBLite consensus disorder prediction 89 131 - -
Gso6g1050 289 ProSitePatterns Zinc finger Dof-type signature. 47 83 IPR003851 GO:0003677|GO:0006355
Gso6g1050 289 ProSiteProfiles Zinc finger Dof-type profile. 45 99 IPR003851 GO:0003677|GO:0006355
Gso6g1050 289 MobiDBLite consensus disorder prediction 99 131 - -
Gso6g1050 289 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 23 195 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1050 Gso-Chr6 10188282 10189815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1050 37 226 C2C2-Dof Transcription Factor Family AT3G52440 43.379 5.36e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso6g1050 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1050 - - gmx:100806008 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2006 4 50415134 50416430 Gso6g1050 6 10188282 10189815 GST