Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0953 ATGCCAAATCCAAATCCAAAGCACCTTTTCCACGCCACTCTCTTCCTCTCGATACTTCTCCAGGCGCTGTCTAAATCCACGATTGAGCCATGCTCGAACTCCGACTCATGCAACGCGCTTCTGGGATACACCCTCTACACGGACCTCAAAGTCTCCGAAGTGGCGTCGCTCTTCCAAATCGACCCCATCGCGCTTCTCACCGCGAACGCCATCGACATCTCTTACCCCGACGTGGAGCACCACATTCTTCCCTCGAAGCTCTTCCTCAAAGTCCCCATCTCCTGCTCCTGCGTCGACGGCATTCGCAAATCCGTCGCTACTCACTACAAGACCCGCCCCTCCGACACCCTCTCCTCCATCGCCGACGCCGTCTACGCCGGCCTCGTCTCCTCCGACCAGCTCCGCGAGGCTAACTCCATTTCCGACCCTTCAGTTCTTGATGTGGGCCAAAACCTCGTCGTTCCTCTCCCTTGCACCTGCTTCAACGGCTCCGATAACTCTCTCCCCGCGATTTACCTCTCTTATGTTGTTCGCCCCGTTGATACCCTCGCTGCCGTTGCTGCTAGGTACTTCACCACTCTCACTGATTTGATGAATGTTAATGCCATGGGAAGCACTGCTATTAACGACGGTGATATCCTCGCTGTTCCAATACCCGCTTGTGCTTCGAATTTTCCGAAATCCGCCTCTGATTTTGGCATGCTTGTCCCTAATGGAAGCTACGCCATTACCGCGGGGCACTGTGTGCAGTGTAGCTGTGGACCCAAAAACCTTGATTTGTACTGTATGCCGGCTTCTTTGGCTGTTTCTTGCTCCAGCATGCAATGTAGAGGCAGCAACCTTATGCTTGGGAATGTTACCGTTCAGCAGACTAGTGGTGGTTGCAATGTTACTGCTTGCAATTATGATGGCATTGTTAATGGCAGCATTGTAACAACGTTGTCCCCTTCTCTTCAGCCTCAATGTCCAGGGCTGCAGGAATTCCCTCCTCTTGTTGCCCCACCTACAACCGTTGCAAGGGACACGGTGTTTGCACCAGCACCAGCACCACTGTTCGATGGAGATGGTCCAGCATCACCCAAATCATCGCTGGTGCCTTCAACGGGGCTTCCAGGAGGATTCTCTCCTGCAAATGGCCCTATTAGCGGCATATCTTCTGGTGCTTCGGCTGCATGCTCCTTGGTGAAACCATTTCCCGCTTTGACGTATGCACTAGTGTTATTGCTTGTCAAGTTGATGATACCCGTGGCATTGTAA 1257 0.5298 MPNPNPKHLFHATLFLSILLQALSKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSKLFLKVPISCSCVDGIRKSVATHYKTRPSDTLSSIADAVYAGLVSSDQLREANSISDPSVLDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVRPVDTLAAVAARYFTTLTDLMNVNAMGSTAINDGDILAVPIPACASNFPKSASDFGMLVPNGSYAITAGHCVQCSCGPKNLDLYCMPASLAVSCSSMQCRGSNLMLGNVTVQQTSGGCNVTACNYDGIVNGSIVTTLSPSLQPQCPGLQEFPPLVAPPTTVARDTVFAPAPAPLFDGDGPASPKSSLVPSTGLPGGFSPANGPISGISSGASAACSLVKPFPALTYALVLLLVKLMIPVAL* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0953 418 CDD LysM 174 216 IPR018392 -
Gso6g0953 418 ProSiteProfiles LysM domain profile. 107 154 IPR018392 -
Gso6g0953 418 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 3 394 - -
Gso6g0953 418 SUPERFAMILY LysM domain 107 156 IPR036779 -
Gso6g0953 418 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 3 394 - -
Gso6g0953 418 Pfam LysM domain 109 155 IPR018392 -
Gso6g0953 418 Pfam LysM domain 175 217 IPR018392 -
Gso6g0953 418 SMART LysM_2 108 155 IPR018392 -
Gso6g0953 418 SMART LysM_2 174 217 IPR018392 -
Gso6g0953 418 SUPERFAMILY LysM domain 173 218 IPR036779 -
Gso6g0953 418 Gene3D LysM domain 101 160 IPR036779 -
Gso6g0953 418 ProSiteProfiles LysM domain profile. 173 216 IPR018392 -
Gso6g0953 418 CDD LysM 107 154 IPR018392 -
Gso6g0953 418 Gene3D LysM domain 161 228 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0953 Gso-Chr6 9183731 9186472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0953 5 393 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 68.782 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0953 - - gmx:100777292 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2089 4 51320929 51323712 Gso6g0953 6 9183731 9186472 GST