Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0372 ATGTTCAACCATGATTCCTTCTCCGCTTTCAGCGACTGCAACAGCGACAGATCCGCCGAATTTCCCACGCCGTCTTCTGAGAATTCCGACGAACTCATTCGGCAACTTGTTCTCAAATTGGTCTCCTGTTCCATTGAGGAACAAAAACAAGCGACGATGGAAATCAGGTTACTCGCCAAGAACAAGCAAGAGAACCGCCCCAAAATCGCAAAAGCCGGCGCCATTCAGCCCTTGATTTCACTCTTACCATCATCAGACCTTCAGCTTCAGGAATACGTGGTGACCGCGATTCTGAATCTCTCCCTCTGCGACGAGAACAAGGAGCTCATCGCTTCTCATGGAGCGGTGAAGGCGCTGGTGGCGCCGCTGGAGAGAGGGACGGCGACGGCGAAGGAGAACGCGGCGTGCGCCTTGGTTCGTTTATCGCACAACAGGGAGGAAGAGAAGGTGGCGATAGGGAGGGCGGGGGCGATTCCGCATCTGGTGAAGCTTCTAGAAGGAGGGGGATTGCGCGGGAAGAAGGACGCGGCGACTGCGCTCTACGCGCTGTGTTCGGCCAAGGAGAATAAGGTGAGGGCGGTGAGGGCGGGGATTATGAGGGGGCTGGTGGAGCTGATGGCGGACTTGGGGTCGAGCATGGTGGACAAGGCGGTGTACGTGGTGAGCGTGGTGGTGGGGGTGGCGGAGGCGAGGGCGGCGCTGGTGGAGGAAGGAGGGATTCCGGTGCTGGTGGAGATAGTGGAGGTGGGGACGCAGAGGCAGAAGGATATTGCGGCTGGGGTGTTGTTGCAGATTTGTGAGGAGAGTGTGGTGTACCGTACTATGGTGTCCCGCGAAGGAGCCATTCCTCCATTGGTTGCTTTGTCCCAGTCAAATTCCAATCGCGCCAAGCAAAAGGCTCAGAAACTAATACAACTTCTACCACAACCAAGATCCGCCAATGGCGCTGCTCCCACCTCGGAAATGCCACCAATCCAACACTGA 984 0.5681 MFNHDSFSAFSDCNSDRSAEFPTPSSENSDELIRQLVLKLVSCSIEEQKQATMEIRLLAKNKQENRPKIAKAGAIQPLISLLPSSDLQLQEYVVTAILNLSLCDENKELIASHGAVKALVAPLERGTATAKENAACALVRLSHNREEEKVAIGRAGAIPHLVKLLEGGGLRGKKDAATALYALCSAKENKVRAVRAGIMRGLVELMADLGSSMVDKAVYVVSVVVGVAEARAALVEEGGIPVLVEIVEVGTQRQKDIAAGVLLQICEESVVYRTMVSREGAIPPLVALSQSNSNRAKQKAQKLIQLLPQPRSANGAAPTSEMPPIQH* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0372 327 Pfam Armadillo/beta-catenin-like repeat 148 184 IPR000225 GO:0005515
Gso6g0372 327 Pfam Armadillo/beta-catenin-like repeat 63 101 IPR000225 GO:0005515
Gso6g0372 327 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 73 115 IPR000225 GO:0005515
Gso6g0372 327 Gene3D - 14 171 IPR011989 -
Gso6g0372 327 Gene3D - 172 313 IPR011989 -
Gso6g0372 327 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 5 317 - -
Gso6g0372 327 SUPERFAMILY ARM repeat 30 307 IPR016024 -
Gso6g0372 327 SMART arm_5 103 143 IPR000225 GO:0005515
Gso6g0372 327 SMART arm_5 62 102 IPR000225 GO:0005515
Gso6g0372 327 SMART arm_5 186 226 IPR000225 GO:0005515
Gso6g0372 327 SMART arm_5 145 185 IPR000225 GO:0005515
Gso6g0372 327 SMART arm_5 227 267 IPR000225 GO:0005515
Gso6g0372 327 MobiDBLite consensus disorder prediction 1 27 - -
Gso6g0372 327 PANTHER U BOX DOMAIN-CONTAINING 5 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0372 Gso-Chr6 3476218 3477808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0372 24 314 U-box Gene Family AT2G23140 48.148 1.19e-75 242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0762 14 8017672 8019789 Gso6g0372 6 3476218 3477808 PCT
Gso17g2007 17 39407866 39410095 Gso6g0372 6 3476218 3477808 PCT
Gso6g0372 6 3476218 3477808 Gso14g0762 14 8017672 8019789 PCT
Gso6g0372 6 3476218 3477808 Gso17g2007 17 39407866 39410095 PCT