Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0346 ATGGCTTACCACCATCATGACCACACCAACCGGAAATCCCTTTTGGACACCCTATACTGCTCCGAAGCAGAGGAGGACTACGGTCATTTCCTAAACAACTCCTCCCCTGCGTCCCCTCCTTTCTTGCTCCAAAGCGACATGTTTTCGGACGAACAAGAGTTGACATCGCTGCTGGGGAAAGAACACCACAACCCTCTAAGCACCTGTCTCCAAACCAACCCTGCCTTGGACTTTGCTCGCCGGGAAGCCGTGGAGTGGATGCTCAAAGTCAACTCCCATTACTCTTTCTCTGCTCTCACCGCTGTTCTTTCGGTCAACTACTTTGACCGTTTTCTCTTCAGCTTCCGCTTTCAGAATGACAAGCCATGGATGGTTCAGCTCGCTGCCGTCGCTTGCCTCTCCATCGCTGCCAAAGTTGAGGAGACGCACGTTCCCTTTCTTATTGACCTTCAACAAGTGGATGAGAGTAGATACTTGTTTGAAGCCAAAACTATTAAAAAGATGGAGATTTTGGTCCTTTCCACTCTTGGATGGAAGATGAACCCCCCAACCCCTCTCTCGTTTCTTGATTACTTCACAAGAAGGCTTGGATCGAAGGATCATCTCTGCTGGGAGTTCCTCAGCAAGTCTCAAGGCGTTCTTCTCTCCCTCCTTGGAGATTCGAGGTTTATGAGTTATCTACCTTCTGTATTGGCAACTGCTACGATGATGCACGTTGTGAAAAGCGTGGAGCCTGGTCTAGAAGCTGAATACAAGAGCCAGCTCTTTGGTATTCTCAGAATCGACAAGGAGAAGCCTGAGAAGGTGAATTCTTGTTGCAAGCTGTTGTTGGAGGTGTGGTCAGGGTACGAGGAGGAGGAGCAGGAGCAGGGGAAGCAATGCATGAAACGCAAGTTTGGAATAGGGTCGATTCCTGGAAGCCCAAACGGCGTGATGGATGTGTCGTTTAGCTGTGATAGTAGCTCCAATGACTCTTCGGTCTCTTCCTCACCGGAACCTTTGTCAAAGAAGAGTAGAAGTGAAGAACAAGAGCAGCTTCTTCTACCAAACCCAAACCATTCCAACTCAGATTTTCTCCATCGCCTTTAA 1089 0.4885 MAYHHHDHTNRKSLLDTLYCSEAEEDYGHFLNNSSPASPPFLLQSDMFSDEQELTSLLGKEHHNPLSTCLQTNPALDFARREAVEWMLKVNSHYSFSALTAVLSVNYFDRFLFSFRFQNDKPWMVQLAAVACLSIAAKVEETHVPFLIDLQQVDESRYLFEAKTIKKMEILVLSTLGWKMNPPTPLSFLDYFTRRLGSKDHLCWEFLSKSQGVLLSLLGDSRFMSYLPSVLATATMMHVVKSVEPGLEAEYKSQLFGILRIDKEKPEKVNSCCKLLLEVWSGYEEEEQEQGKQCMKRKFGIGSIPGSPNGVMDVSFSCDSSSNDSSVSSSPEPLSKKSRSEEQEQLLLPNPNHSNSDFLHRL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0346 362 PANTHER CYCLINS 30 339 IPR039361 -
Gso6g0346 362 ProSitePatterns Cyclins signature. 80 111 IPR006671 -
Gso6g0346 362 SUPERFAMILY Cyclin-like 165 287 IPR036915 -
Gso6g0346 362 Gene3D - 182 264 - -
Gso6g0346 362 SMART Cyclin_C_2 183 320 IPR004367 -
Gso6g0346 362 MobiDBLite consensus disorder prediction 314 362 - -
Gso6g0346 362 MobiDBLite consensus disorder prediction 314 334 - -
Gso6g0346 362 SMART cyclin_7 85 174 IPR013763 -
Gso6g0346 362 Pfam Cyclin, C-terminal domain 183 290 IPR004367 -
Gso6g0346 362 SUPERFAMILY Cyclin-like 58 181 IPR036915 -
Gso6g0346 362 Gene3D - 68 181 - -
Gso6g0346 362 CDD CYCLIN 80 173 IPR013763 -
Gso6g0346 362 PANTHER CYCLIN D3.1 PROTEIN 30 339 - -
Gso6g0346 362 Pfam Cyclin, N-terminal domain 67 181 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0346 Gso-Chr6 3257612 3259735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0346 14 362 Core Cell Cycle Gene Families AT5G67260 44.474 6.24e-85 261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0366 4 3341155 3342632 Gso6g0346 6 3257612 3259735 GST
Gso14g0740 14 7676417 7678744 Gso6g0346 6 3257612 3259735 PCT
Gso17g2027 17 39742674 39744863 Gso6g0346 6 3257612 3259735 PCT
Gso6g0346 6 3257612 3259735 Gso14g0740 14 7676417 7678744 PCT
Gso6g0346 6 3257612 3259735 Gso17g2027 17 39742674 39744863 PCT