Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0333 ATGCAAGGGCAGAGAGGTACAGTTGGTTCAATGCCTGAAACCTTAGAATTTGATTGTGGATCTGCATCAGGCAATTCTACCGTGGATCAGCAAATTTGCTGGAATAATGTGAATCCTGCAGAGAATCAAATACCTGATTATATACTTTCTCCTGGTGATATGAACTCATCTTATGGGAATTCCATTATTAATCGTGAATGGCAAAATTTGAGTGGATGGAGCTTAGGGGAGCCAAGTTCCAGTAATACACCAAATGAGGTTAACAATAATGAGCAAAAAAGAGAACTTGGATGGTCATCAACCATTACTGCTGGTGCATTGGCTGGTCCAAGACTAGAAGAAAGGCGCCTTGAACCAGCCAATGCTCTTTCACTAGACAATGTCAATACAGGTCCTATGTACACGCGTAGCCCCAATTCTCGTTTGATGTCCCAGAATCTCAACTTAAATGCAGGTTTAGCGGACAATGGCAGTGATAATAGTCAACATCTGGAGCTCCCTAACTTAAACAAGTCTAGTGGGTCAGCAAACGAGTGTATACCACCTAATGTTGGATCTGGTTCTTTTCTGCTTCCTTCTGGAAATAATGGCTTCCTGGTAGAAGATACTGATGGTAGGCCAGGTTGTTCTCATGATACTCGACGTGTCTCTTGTAAAAGAAAGGCTGTTGAAGGAAATAATGGACAATCTTCAGATGCTGGGAGTTCTAGCTACAGTCAGCATACAGATGGTAGTGCTTGGCACACCATTCCTACTCAGGTTAATGCTGGAAGCAGTTCAAGAAGATCTATTTCCTCAGAACAGGTAAATGCAAGACTTGGCCTGGGAATGGGGGATGGAGCATCTGAAAACGTTCCTGATTCAAACATTGCAGGAAGCTCAGAAAGCTTTCACAGGAATTTCCGTTTGAGGTTAAATCCTTCGAACCCACCAAATTCTGTTCCTCCCACTGCATTCTCAACTGGGAGCATGATTAGGCATTCTGGTGTCCCTCCATCCTCTCAAGTATCCCAAAGGCTTCATTTTGTTGATAATTCTCTGAACTTGAGGTCAGCACCACCGATAGATAATGTGGTTCCTCAAAGCCAGCCACTTGTAATCCATGTTCCTGCTTTGCCTAGGAATAGACAATCATTTAGATGGAGTGGTGGTTCTAGCTCCAGAAACATCCATTCATCAAACTCAGTTATATGCGCAGACAGGGATCAGCAGGATGCAAGCTCAAGAAGAATGTCTAGAAATATGTTAGAACATCCAGTCTTTGTACCTGCAACTGATTTAAGAAATTTAGTTCAAAATCCAACAGTTAGAGCTTCAAGTTCAAGTAGTGAAAATTTAAGTATTCCCGGAAATGTTGCTTCTTCATCACGGACTGGATCAAATCCAGCTACCAATCCCTCATCTGCCACAACTTTTTCTCGTTCTAATCCTCCACAGCATCCACGGAGGTTATCTGAATATGTTCGTCGTTCGTTGTTTTCTCCCAGTTCTGATGCTATTGGAAGTCCAAGCCATAATTATTCTTCCTTGCGCTCTGGTCTTTCTACATCTGAACCAAGGGCGTTATCATCTGGGAGTGGGGCAAACCCGAGATCAGCTTCATGGTTGGAGAGGCAAGGTGATAGTGAATTTGGAATTCCTTATTCACTACGTACTTTGGCTGTTGCAAGTGAAGGAGGAAGTAGTAGACTTGTATCTGAGCTCCGCAATGTTTTGGGCCTTATGCGTAGAGGTGGGAATGTGCGATTTGAGGATGTTGTGATCCTTGATCATCAATCATTTCTTTCTGGAATAGCTGATGTTCGTGATCGGCACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGTTGTTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAACTGTATTGAAACACTTGAAACAGAGAAAGCACTCGGCTGAAAAAGGGCCTCAGATTGATGCAGAACCCTGTTGTGTTTGTCAGGAGGATTATGGTGATGAGGATGATATTGGAACGCTTGATTGTGGCCATGATTTCCATAGCAGCTGTATCAAACAGTGGTTAATGCATAAGAATCTTTGTCCCATTTGTAAGACAACGGGTTTGGCAACATGA 2127 0.4307 MQGQRGTVGSMPETLEFDCGSASGNSTVDQQICWNNVNPAENQIPDYILSPGDMNSSYGNSIINREWQNLSGWSLGEPSSSNTPNEVNNNEQKRELGWSSTITAGALAGPRLEERRLEPANALSLDNVNTGPMYTRSPNSRLMSQNLNLNAGLADNGSDNSQHLELPNLNKSSGSANECIPPNVGSGSFLLPSGNNGFLVEDTDGRPGCSHDTRRVSCKRKAVEGNNGQSSDAGSSSYSQHTDGSAWHTIPTQVNAGSSSRRSISSEQVNARLGLGMGDGASENVPDSNIAGSSESFHRNFRLRLNPSNPPNSVPPTAFSTGSMIRHSGVPPSSQVSQRLHFVDNSLNLRSAPPIDNVVPQSQPLVIHVPALPRNRQSFRWSGGSSSRNIHSSNSVICADRDQQDASSRRMSRNMLEHPVFVPATDLRNLVQNPTVRASSSSSENLSIPGNVASSSRTGSNPATNPSSATTFSRSNPPQHPRRLSEYVRRSLFSPSSDAIGSPSHNYSSLRSGLSTSEPRALSSGSGANPRSASWLERQGDSEFGIPYSLRTLAVASEGGSSRLVSELRNVLGLMRRGGNVRFEDVVILDHQSFLSGIADVRDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVLKHLKQRKHSAEKGPQIDAEPCCVCQEDYGDEDDIGTLDCGHDFHSSCIKQWLMHKNLCPICKTTGLAT* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0333 708 MobiDBLite consensus disorder prediction 223 265 - -
Gso6g0333 708 MobiDBLite consensus disorder prediction 274 293 - -
Gso6g0333 708 MobiDBLite consensus disorder prediction 205 221 - -
Gso6g0333 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 707 - -
Gso6g0333 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 707 IPR045191 GO:0061630
Gso6g0333 708 ProSiteProfiles Zinc finger RING-type profile. 661 702 IPR001841 -
Gso6g0333 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 625 705 IPR013083 -
Gso6g0333 708 MobiDBLite consensus disorder prediction 202 265 - -
Gso6g0333 708 SUPERFAMILY RING/U-box 660 704 - -
Gso6g0333 708 MobiDBLite consensus disorder prediction 434 480 - -
Gso6g0333 708 SMART ring_2 661 701 IPR001841 -
Gso6g0333 708 MobiDBLite consensus disorder prediction 379 402 - -
Gso6g0333 708 Pfam Ring finger domain 661 702 IPR001841 -
Gso6g0333 708 MobiDBLite consensus disorder prediction 434 483 - -
Gso6g0333 708 MobiDBLite consensus disorder prediction 495 535 - -
Gso6g0333 708 MobiDBLite consensus disorder prediction 379 410 - -
Gso6g0333 708 CDD RING-H2_TTC3 660 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0333 Gso-Chr6 3097997 3105617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0333 217 708 C3H Transcription Factor Family AT2G15530 37.595 4.92e-72 246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0350 4 3149769 3157734 Gso6g0333 6 3097997 3105617 GST
Gso17g2046 17 39988630 39993771 Gso6g0333 6 3097997 3105617 PCT
Gso6g0333 6 3097997 3105617 Gso17g2046 17 39988630 39993771 PCT