Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0332 ATGGCTCTTCTTCTAGACAACTGTGAAGGCATTTTACTCTCTTTGGACTCACACAAATCAGTGCCAGCTCCTTTCCTCACCAAAACATACCAACTGGTGGATGATCCCGCCACAGATCACATTGTGTCTTGGGGCGAAGACGACACCACCTTCGTCGTTTGGCGTCCTCCTGAGTTCGCAAGAGACCTTCTTCCTAACTACTTCAAACACAACAACTTCTCAAGCTTCGTTCGCCAGCTCAACACCTATGGTTTTAGAAAGATTGTGCCAGACCGATGGGAGTTCGCCAACGAATTCTTCAAGAAGGGAGAGAAACACTTGCTGTGCGAGATCCATAGAAGAAAAACCGCTCAGCCTCAACAAGGAAGCATGAACCACCATCACCACCATTCTCATTCTCCCTTAGGAGTCAACGTTAGCGTCCCAACTTTCTTTCCCTTCTCCAGCAGAGTCAGCATCTCTCCCTCCAACGACTCCGACGACCAAGCCAATTGGTGCGACTCGCCGCCACGTGGATCCACCTCATTGGTGAACGGTGCAGCAGCAGCAGCCAACTACAACACTTCCGTCACGGCGCTTTCGGAGGACAACGAGAGACTCAGAAGAAGCAACAACATGCTCATGTCAGAACTCGCACACATGAAGAAGCTCTACAATGACATCATCTACTTCGTTCAGAACCATGTCAAGCCAGTGGCTCCAAGCAACTCTTACTCTTCTTCTTTGCTACTATGCAATACACCTTCTGCCACTCCAATAACTAGTGGCGGCAATGTTTCAATGACGCAAAGGCCAACGAACCAGCTTCTGGGCTATTATTCTACTAACCCTAAGCAAGGAGCTACACAAATAACTCAACCTCAGACCTATGTTGTGAACTCTCCCACCAACACATCAAGGAGTTCTATAACCATTGTTGAAGGGCCTAACAGCAACATTAACAGCTGCAAGACCAAACTTTTTGGGGTGTCGCTGCAGTCCAAGAAAAGGGTGCACCCGGATTATGGATCTAATCCAGAGACCAACAAGGCTCGTTTGGTTTTGGAAAAGGATGACTTGGGCTTGAATCTCATGCCTCCATCCACTTGTTAG 1092 0.4826 MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQQGSMNHHHHHSHSPLGVNVSVPTFFPFSSRVSISPSNDSDDQANWCDSPPRGSTSLVNGAAAAANYNTSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSSLLLCNTPSATPITSGGNVSMTQRPTNQLLGYYSTNPKQGATQITQPQTYVVNSPTNTSRSSITIVEGPNSNINSCKTKLFGVSLQSKKRVHPDYGSNPETNKARLVLEKDDLGLNLMPPSTC* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0332 363 Coils Coil 190 210 - -
Gso6g0332 363 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso6g0332 363 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 239 IPR027725 -
Gso6g0332 363 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 291 362 IPR027725 -
Gso6g0332 363 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso6g0332 363 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso6g0332 363 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso6g0332 363 PANTHER BNAC06G00310D PROTEIN 12 239 - -
Gso6g0332 363 PANTHER BNAC06G00310D PROTEIN 291 362 - -
Gso6g0332 363 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso6g0332 363 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Gso6g0332 363 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso6g0332 363 Gene3D - 17 116 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0332 Gso-Chr6 3078273 3079887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0332 1 362 HSF AT1G46264 57.292 4.15e-125 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso6g0332 HSF_DNA-bind 2.8e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0349 4 3132554 3134203 Gso6g0332 6 3078273 3079887 GST
Gso14g0718 14 7312610 7314539 Gso6g0332 6 3078273 3079887 PCT
Gso17g2049 17 40048502 40050416 Gso6g0332 6 3078273 3079887 PCT
Gso6g0332 6 3078273 3079887 Gso14g0718 14 7312610 7314539 PCT
Gso6g0332 6 3078273 3079887 Gso17g2049 17 40048502 40050416 PCT