Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0317 ATGTCTGCTCGAAGTGAACACCAATCGGTTCCTCTTTCGGTGCTGCTGAAGCGCGAGTTGGCGAATGAGAAAATTGAGAAGCCCGAGGTTGTTATTTTGCACGGCCAAGCTAGTGAGAATAAGAAAGGAGAGGATTTCACGCTATTGAAGACGGAATGCCAAAGGGTGCTTGGAGATGGGGTTTCTACCTATTCTGTTTTTGGGCTATTCGATGGACACAATGGATCTGCTGCCGCTATTTATGCCAAGGAGAATCTTCTAAATAATGTTTTAAGTGCAATTCCTTCTGATCTTAACAGAGATGAGTGGGTAGCAGCGTTGCCTAGGGCTTTGGTTGCAGGCTTTGTAAAAACTGATAAAGATTTTCAAGAGAAAGCACAAACATCAGGAACAACTGTAACCTTTATGATTGTAGAAGGATGGGTTTTAACAGTTGCATCAGTTGGTGATTCCCGTTGCATACTTGAGCCTTCCGAAGGTGGGATTTTTTACTTGTCAGCAGACCATAGACTAGAGAGCAATGAAGAGGAGAGGGTCCGCATCACTTCTAGTGGAGGTGAGGTTGGTCGTCTAAATACAGGAGGAGGCACAGAGGTTGGTCCTTTGAGATGTTGGCCTGGTGGCTTGTGTCTCTCACGATCCATTGGTGATATGGATGTTGGTGAATTTATTGTCCCTGTACCACATGTAAAGCAAGTGAAGCTTTCCACTGCTGGAGGCAGGATTATTCTCAGCAGTGATGGTGTCTGGGATGCTCTAAGTGCAGAAATGGCCCTTGATTGCTGTCGTGGCATGCCACCTGAGGCTGCAGCAACCCATATTGTGAAAGAATCTGTGCAAGCAAAGGGACTTAGAGATGACACAACCTGCATTGTTATTGACATATTACCCCTGGAGAAGCCACCTACTTCTGTGCCAACACAAAAGAAACCGGTGAAAGGAATGCTTAAGTCTATTTTTCGCAAAAAGTCCTCTGAATCATCAACTTTTATTGAAAAAGAATACCTGGAGCCAGATGTGGTACAGGAACTATACGAGGAAGGGTCTGCTATGCTTTCAGAGAGGTTAGAAACAAAATATCCACTTTGCAACATGTTCAAGTTGTTCATCTGTGCAGTGTGTCAGGTAGAGATTAAACCCGGGGAGGGTATTTCCATACATGAGGGTCTGACTAACCCAGGAAGATTGCGTCCCTGGGATGGGCCTTTCCTTTGCTCAAGTTGCCAAGAAAAGAAAGAAGCTATGGAAGGGAAGCGAACATCAGACTTAGCAGCGGGAGTGACTGATGAATTATCATGTACATTTGCATTTTGA 1314 0.4482 MSARSEHQSVPLSVLLKRELANEKIEKPEVVILHGQASENKKGEDFTLLKTECQRVLGDGVSTYSVFGLFDGHNGSAAAIYAKENLLNNVLSAIPSDLNRDEWVAALPRALVAGFVKTDKDFQEKAQTSGTTVTFMIVEGWVLTVASVGDSRCILEPSEGGIFYLSADHRLESNEEERVRITSSGGEVGRLNTGGGTEVGPLRCWPGGLCLSRSIGDMDVGEFIVPVPHVKQVKLSTAGGRIILSSDGVWDALSAEMALDCCRGMPPEAAATHIVKESVQAKGLRDDTTCIVIDILPLEKPPTSVPTQKKPVKGMLKSIFRKKSSESSTFIEKEYLEPDVVQELYEEGSAMLSERLETKYPLCNMFKLFICAVCQVEIKPGEGISIHEGLTNPGRLRPWDGPFLCSSCQEKKEAMEGKRTSDLAAGVTDELSCTFAF* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0317 437 Pfam Protein phosphatase 2C 59 265 IPR001932 -
Gso6g0317 437 Gene3D - 30 300 IPR036457 -
Gso6g0317 437 PANTHER ALPHABET, ISOFORM E-RELATED 2 423 - -
Gso6g0317 437 SMART PP2C_4 23 293 IPR001932 -
Gso6g0317 437 ProSiteProfiles PPM-type phosphatase domain profile. 24 295 IPR001932 -
Gso6g0317 437 SMART PP2C_SIG_2 56 295 IPR001932 -
Gso6g0317 437 CDD PP2Cc 40 295 IPR001932 -
Gso6g0317 437 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 2 423 - -
Gso6g0317 437 SUPERFAMILY PP2C-like 40 295 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0317 Gso-Chr6 2943544 2948586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0317 1 421 PP2C-type Phosphatase Gene Family AT1G47380 80.523 0.0 726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0333 4 3003748 3008074 Gso6g0317 6 2943544 2948586 GST
Gso14g0702 14 7099635 7105285 Gso6g0317 6 2943544 2948586 PCT
Gso17g2062 17 40249124 40254751 Gso6g0317 6 2943544 2948586 PCT
Gso6g0317 6 2943544 2948586 Gso14g0702 14 7099635 7105285 PCT
Gso6g0317 6 2943544 2948586 Gso17g2062 17 40249124 40254751 PCT