Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0308 ATGCAACCAACATCCAACGGCTCTGATTCGCAAGCGACGGAGCAGCGGACGCCGCCGCCCCAGTGGATGCCGATGCAGTACCCGGCAGCGGCGATGGTAATGCAGCACCACATGATGCCGCCTCAACATTACGCTCCTCCGCCGCCGCAGCCCTACATGGCCTACCACCACTACCAACAACAGCTGCCGCACGCCCTGCACGCGCACCATCAGGGATCCAGTGCCGAGAACAAGACCGTTTGGGTCGGCGATTTGCATCATTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCTTCCAACGGCGAGATTTCCTCAATTAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACATGGCACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATATTGATGCCTAACACAGAGCAACCTTTCCGCCTTAACTGGGCAACATTTGGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGCATGTTGCATGAAACATTTTCTAATAGATACCCATCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATGATGAGAGGTCTCAGGCTATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAGACATCTGGCTACCAACAAGGAAGTCAGTCAAATGGCATATCCAGCCAATCTGAAGCTGATTCTACAAACACAACTATATTTGTCGGAGGACTTGACTCTAATGTTACAGCTGAAGATCTTAAGCAACCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAAATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAACGATTGGCAAACAAATGGTTCGTCTTTCATGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAGCAGATTTCGGCAATGCTTGGAGTGGGGCGTATTATGGAGGGCCTGTTTATGATGGTTATGGATATGCTTTGCCACCATCTCACGACCCAAGCATATATGCTGCTGCTTATGGGGCTTACCCTATTTATGGAGGACACCAACAGCAAGTAAGCTGA 1221 0.4685 MQPTSNGSDSQATEQRTPPPQWMPMQYPAAAMVMQHHMMPPQHYAPPPPQPYMAYHHYQQQLPHALHAHHQGSSAENKTVWVGDLHHWMDENYLHRCFASNGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWATFGTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDDERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGISSQSEADSTNTTIFVGGLDSNVTAEDLKQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRADFGNAWSGAYYGGPVYDGYGYALPPSHDPSIYAAAYGAYPIYGGHQQQVS* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0308 406 CDD RRM1_SECp43_like 79 159 - -
Gso6g0308 406 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 15 405 - -
Gso6g0308 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 348 IPR000504 GO:0003723
Gso6g0308 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 158 IPR000504 GO:0003723
Gso6g0308 406 MobiDBLite consensus disorder prediction 1 20 - -
Gso6g0308 406 Gene3D - 77 157 IPR012677 -
Gso6g0308 406 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 15 405 - -
Gso6g0308 406 Gene3D - 170 246 IPR012677 -
Gso6g0308 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 250 IPR000504 GO:0003723
Gso6g0308 406 Gene3D - 253 355 IPR012677 -
Gso6g0308 406 MobiDBLite consensus disorder prediction 1 24 - -
Gso6g0308 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 147 IPR000504 GO:0003723
Gso6g0308 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 339 IPR000504 GO:0003723
Gso6g0308 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 242 IPR000504 GO:0003723
Gso6g0308 406 MobiDBLite consensus disorder prediction 251 272 - -
Gso6g0308 406 CDD RRM3_NGR1_NAM8_like 275 346 - -
Gso6g0308 406 SMART rrm1_1 79 154 IPR000504 GO:0003723
Gso6g0308 406 SMART rrm1_1 172 246 IPR000504 GO:0003723
Gso6g0308 406 SMART rrm1_1 277 344 IPR000504 GO:0003723
Gso6g0308 406 CDD RRM2_SECp43_like 170 249 - -
Gso6g0308 406 SUPERFAMILY RNA-binding domain, RBD 41 159 IPR035979 GO:0003676
Gso6g0308 406 MobiDBLite consensus disorder prediction 247 272 - -
Gso6g0308 406 SUPERFAMILY RNA-binding domain, RBD 170 349 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0308 Gso-Chr6 2873844 2880972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0308 80 358 Eukaryotic Initiation Factors Gene Family AT2G23350 28.767 1.96e-27 112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0324 4 2936234 2942412 Gso6g0308 6 2873844 2880972 GST
Gso14g0690 14 6969226 6973328 Gso6g0308 6 2873844 2880972 PCT
Gso17g2074 17 40371694 40375829 Gso6g0308 6 2873844 2880972 PCT
Gso6g0308 6 2873844 2880972 Gso14g0690 14 6969226 6973328 PCT
Gso6g0308 6 2873844 2880972 Gso17g2074 17 40371694 40375829 PCT