Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0304 ATGGAAGCAACCAACAGAAGCTCTTCCTCCACTTCCTCTTCCTCTGATTGCTGCTCTTCCGAGTCCAACCCCAATAAGCCCGACAGAATCAAAGGCCCATGGAGCGCCGAAGAGGATCGGATCCTGACCGGACTCGTCGAACGATACGGCCCACGAAATTGGTCCCTCATCAGCCGCTACATTAAGGGAAGGTCCGGCAAGTCATGCCGGCTCCGATGGTGCAATCAGCTTAGCCCCGCCGTGGAGCACCGCCCCTTCTCGGCCCAAGAGGACGACACCATCATCGCGGCCCATGCCCAGTATGGTAACAGGTGGGCCACTATAGCCCGATTGCTACCGGGCCGAACCGATAACGCCGTTAAGAACCACTGGAACTCCACTCTCAAGCGCAGAGCCAAAGGTATTAACATTAATGTTAATCACGCCAACAACGAAGTGGCTGCTTCTTCTTCCGCTCCTTCTCGCCACTTCGACTTCGAGGATGATCCGTTGACCGCGTTGACTCTCGCTCCTCCTGGTATTGCTAATGGCACTGTGGCGGAGGACGCCGTGCCGGACCATCGTGCCTCGCCGGAGGGGTTTTGGGATATGATGAGGGATGTGATCGCGAGGGAAGTGAGGGAATATGTGTCTTCCAATTTTTCTGATAACTCGGGTTTTCATTAA 666 0.5526 MEATNRSSSSTSSSSDCCSSESNPNKPDRIKGPWSAEEDRILTGLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSAQEDDTIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRAKGININVNHANNEVAASSSAPSRHFDFEDDPLTALTLAPPGIANGTVAEDAVPDHRASPEGFWDMMRDVIAREVREYVSSNFSDNSGFH* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0304 221 ProSiteProfiles Myb-like domain profile. 26 77 IPR001005 -
Gso6g0304 221 CDD SANT 85 128 IPR001005 -
Gso6g0304 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 132 IPR017930 -
Gso6g0304 221 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Gso6g0304 221 Pfam Myb-like DNA-binding domain 34 91 - -
Gso6g0304 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 81 IPR017930 -
Gso6g0304 221 PANTHER MYB TRANSCRIPTION FACTOR 2 206 - -
Gso6g0304 221 SUPERFAMILY Homeodomain-like 28 124 IPR009057 -
Gso6g0304 221 SMART sant 30 79 IPR001005 -
Gso6g0304 221 SMART sant 82 130 IPR001005 -
Gso6g0304 221 MobiDBLite consensus disorder prediction 1 26 - -
Gso6g0304 221 Gene3D - 30 82 - -
Gso6g0304 221 CDD SANT 33 75 IPR001005 -
Gso6g0304 221 PANTHER MYB PROTEIN-RELATED 2 206 - -
Gso6g0304 221 Gene3D - 84 155 - -
Gso6g0304 221 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0304 Gso-Chr6 2818383 2819606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0304 28 134 MYB Transcription Factor Family AT3G50060 76.636 2.23e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso6g0304 Myb_DNA-bind_6 1.5e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0320 4 2887227 2888224 Gso6g0304 6 2818383 2819606 GST
Gso17g2078 17 40427503 40428457 Gso6g0304 6 2818383 2819606 PCT
Gso6g0304 6 2818383 2819606 Gso17g2078 17 40427503 40428457 PCT