LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso6g0301	ATGAGTACCACCAAGTGTAACAAGCTCTCTTCTACTTCACCTACGATTCACCAGCGTAGGCTCACCCGCCAGAGGAAGCTTCGCTACACCAGTGACAAAGACGCTGCTCTGCATTCAACTACCTCTCTACCCGCTTCTCCTCTTCCTTCCTTTAAGTCCGCTTCCAGTTCCGACCATTGGTCTTCCTCTGCGGTTCCTCAACCGCTTCCGCGTCCCGATTCCCCGTGGATCCGCCGTCACGACCATCATCACCTCGGATCTCCCCCTTTCGAACATCCTGCTTTCTCTTTTCGCAGAAGGTCGGTCGATCATGATGCGGTGAGAAGTTTAAGGTCTGCGAGCAATTTGGGGAGACCTTCTTTTGATCCGGTGACTCCCAATGCTAAATATGATTTGAGAGTAAATATTCCGCCCGCCAGAGTGTTGGCAGGCAATACTAGTTCGTGTAAAGATCACAGAGAACTCTCTCATGACCATGACTCTGAAAATGTTTCCAACTTGAGATTGCATTTTGCGGCCAAGAGTGCCCCCAACAGCATATTCTCCAGTCCTGTTACTAGTCCACGTAGGTCCAGCAATGTAGATTTTTATGACATTTTGAAAGTGTCACCGGCTAAAACTGCTCAGAGTCCAGACCGGTCTCCTCTGCGCAGCCCTGGGAGCCACCTCAATCAAGAGGGGTCTCAGCTTCATAAATTTTCCTCCAGAGTGTGGCCTGAAAATAATCATGTGGATGCAAATCCACATCCACTGCCCCTTCCTCCTAAAGTTTCACCACAGACTGCACACTCATCTCCGCAGCATCAGCCAAGTATCGTGCACCTCAACACAGAAAATTTGCCTTCAATGAAAGGTCAATGGCAGAAAGGAAAACTTATAGGGCGTGGATCATTTGGATCTGTTTATCATGCAACCAACTTAGAGACTGGAGCCTCGTGTGCATTGAAAGAGGTGGATCTGTTCCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTTGAGCAGGAAATCAGAATTCTCCGTCAATTACACCACCCCAACATTGTGCAGTATTATGGCAGTGAAATAGTTGGTGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTTCATAAATTTATGCATGAACATTGTGGAGCTATGACAGAGTCTGTGGTTCGCAATTTCACACGACATATTCTCTCTGGATTGGCATACTTACATGGTACCAAGACTATTCACAGGGATATCAAAGGTGCAAACTTGTTGGTCGATGCATCAGGCAGTGTTAAGCTTGCAGATTTTGGGGTGTCAAAAATTCTGACAGAGAAATCATATGAACTATCATTGAAGGGAAGTCCCTACTGGATGGCTCCTGAGCTCATGAAAGCTTCCATAAAGAAAGAGTCCAGTCCTGACATTGCCATGGCCATTGATATATGGAGCTTAGGGTGCACTATCATTGAAATGCTGACAGGAAAACCTCCTTGGAGCGAATTTGAAGGGCCTCAAGCAATGTTCAAGGTACTGCACAAATCCCCAGATCTACCTGAAAGTTTGTCTTCAGAGGGACAGGATTTCCTTCAGCAGTGTTTCAGAAGGAATCCAGCAGAACGACCATCAGCAGCAGTGCTTCTTACACATGCCTTTGTACAAAATTTGCATGATCAAGATGTTCAAGTTCATTCCCAAGGGCAAAACTGTCCCAGAGGAGACCCTGGACCAGGAGATGATTCACGTAGACATAGCCCCGGTAACAGTTCAAGAAATAGCCGTGGTGTAGGGTCAGCATCCATTCGTGCATGGTTTTTTAACAAAACTCATAATTTAATAGGTGACACTTCGAAAAAATATGTTTCGGAGGATTCTAATCATGTCACATCTTCTCGTGATTCTCCTTGCTCGATGACAGAAATGAACAATCCTCAGTCTCCCATGAAATCTAGTGCCCTTAACTACATGACTGTAACCAATCCCAGCAACATACCCCTCAGTGCTGTTATGAAAATCATCAGGAACATTTGA	2016	0.4563	MSTTKCNKLSSTSPTIHQRRLTRQRKLRYTSDKDAALHSTTSLPASPLPSFKSASSSDHWSSSAVPQPLPRPDSPWIRRHDHHHLGSPPFEHPAFSFRRRSVDHDAVRSLRSASNLGRPSFDPVTPNAKYDLRVNIPPARVLAGNTSSCKDHRELSHDHDSENVSNLRLHFAAKSAPNSIFSSPVTSPRRSSNVDFYDILKVSPAKTAQSPDRSPLRSPGSHLNQEGSQLHKFSSRVWPENNHVDANPHPLPLPPKVSPQTAHSSPQHQPSIVHLNTENLPSMKGQWQKGKLIGRGSFGSVYHATNLETGASCALKEVDLFPDDPKSADCIKQLEQEIRILRQLHHPNIVQYYGSEIVGDRLYIYMEYVHPGSLHKFMHEHCGAMTESVVRNFTRHILSGLAYLHGTKTIHRDIKGANLLVDASGSVKLADFGVSKILTEKSYELSLKGSPYWMAPELMKASIKKESSPDIAMAIDIWSLGCTIIEMLTGKPPWSEFEGPQAMFKVLHKSPDLPESLSSEGQDFLQQCFRRNPAERPSAAVLLTHAFVQNLHDQDVQVHSQGQNCPRGDPGPGDDSRRHSPGNSSRNSRGVGSASIRAWFFNKTHNLIGDTSKKYVSEDSNHVTSSRDSPCSMTEMNNPQSPMKSSALNYMTVTNPSNIPLSAVMKIIRNI*	672

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso6g0301	671	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	7	669	-	-
	Gso6g0301	671	MobiDBLite	consensus disorder prediction	34	64	-	-
	Gso6g0301	671	SMART	serkin_6	287	548	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso6g0301	671	MobiDBLite	consensus disorder prediction	205	269	-	-
	Gso6g0301	671	MobiDBLite	consensus disorder prediction	622	641	-	-
	Gso6g0301	671	MobiDBLite	consensus disorder prediction	74	88	-	-
	Gso6g0301	671	Pfam	Protein kinase domain	288	547	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso6g0301	671	MobiDBLite	consensus disorder prediction	1	93	-	-
	Gso6g0301	671	MobiDBLite	consensus disorder prediction	618	641	-	-
	Gso6g0301	671	MobiDBLite	consensus disorder prediction	207	236	-	-
	Gso6g0301	671	MobiDBLite	consensus disorder prediction	1	18	-	-
	Gso6g0301	671	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA	7	669	-	-
	Gso6g0301	671	ProSitePatterns	Protein kinases ATP-binding region signature.	293	316	IPR017441	GO:0005524
	Gso6g0301	671	ProSiteProfiles	Protein kinase domain profile.	287	548	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso6g0301	671	Gene3D	Transferase(Phosphotransferase) domain 1	284	569	-	-
	Gso6g0301	671	MobiDBLite	consensus disorder prediction	557	590	-	-
	Gso6g0301	671	SUPERFAMILY	Protein kinase-like (PK-like)	263	557	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso6g0301	Gso-Chr6	2791431	2797767	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso6g0301	16	550	MAP Kinase Kinase Kinase	AT5G66850	45.714	1.60e-150	450

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Gso6g0301		Pkinase	6.8e-66	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso14g0685	14	6903766	6910647	Gso6g0301	6	2791431	2797767	PCT
	Gso17g2079	17	40431038	40436780	Gso6g0301	6	2791431	2797767	PCT
	Gso6g0301	6	2791431	2797767	Gso14g0685	14	6903766	6910647	PCT
	Gso6g0301	6	2791431	2797767	Gso17g2079	17	40431038	40436780	PCT