Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0246 ATGGATTCAGCTTGTGCAACCCTGAATGGCCGCCATCTAGCCAAAGTTAGTGAGGGAATTGGAAGAAACAGAACAAGTGGCTTCTGGGGTGAGAGTACGAGGGGAAGTGTGAACACAAAAAGGTTTTTGAGTGTTCAATCATGCAAGACTTCACGAACCAATAGGAATCTTAGAAACTCCAAGCCTGGAAGTGGAATTGCACGCGCTGTTCTCACATCAGACATCGACGAAGATTCCATGGCATTTCAAGGGGTACCCACTTTTGAGAAACCTGAAGTGGACCCAAAAAGTGTGGCTTCCATCATATTGGGTGGAGGTGCAGGAACTCGACTCTTTCCTCTTACTGGCAGAAGAGCCAAGCCAGCGGTTCCAATTGGAGGGTGTTATAGACTCATAGATATCCCCATGAGCAATTGCATCAATAGTGGCATCAGAAAAATTTTCATCTTGACGCAGTTCAATTCTTTCTCTCTCAACCGCCACCTGTCCCGTGCATACAGCTTCGGAAATGGCATGACTTTTGGAGATGGGTTTGTGGAGGTCTTGGCAGCTACTCAAACACCGGGTGAGGCTGGGAAGAAGTGGTTCCAAGGGACAGCTGATGCTGTAAGACAATTTATATGGGTTTTTGAGGATGCCAAGAACAAGAATGTTGAGCATATATTGATACTTTCTGGCGATCATCTTTACCGTATGGACTATATGGACTTTGTACAGAGACATGTTGACACAAATGCCGATATCACAGTTTCATGTGTACCCATGGATGACAGTCGGGCATCAGACTATGGACTGATGAAAATTGATAAAACAGGACGGATTATACAGTTTGCAGAAAAACCTAAGGGATCAGATCTAAAGGCAATGCGTGTTGACACCACTCTTTTAGGGTTATTGCCACAAGAAGCAGAAAAACATCCTTATATTGCATCCATGGGTGTCTACGTGTTTAGAACTGAAACCTTGCTGCAACTATTAAGATGGAAATGTTCTTCATGCAATGACTTTGGATCTGAAATTATCCCATCTGCTGTGAATGAGCACAATGTCCAGGCATATTTGTTCAATGACTACTGGGAAGATATTGGAACTATAAAGTCCTTCTTTGATGCAAATCTTGCTCTAACAGAACAGCCTCCTAAATTTGAATTCTATGATCCAAAGACACCTTTCTTCACTTCCCCCAGATTCCTACCACCTACCAAAGTAGAAAAATGCAAGATTGTGGATGCAATTATATCTCATGGTTGCTTCTTGAGGGAGTGCAGCGTTCAACATTCTATTGTTGGAGTACGCTCACGTTTGGAGTCTGGTGTGGAGCTTCAGGATACGATGATGATGGGTGCTGACTATTATCAAACTGAGTATGAAATTGCATCTCTGGTGGCAGAAGGGAAGGTTCCAATTGGTGTCGGGGCAAATACTAAAATCAGGAATTGCATAATCGACAAGAATGCCAAGATAGGAAGAAATGTGATCATAGCAAACACCGATGGTGTTCAAGAAGCTGACAGGGCAAAGGAAGGATTCTACATTAGGTCGGGCATCACAGTTACATTAAAAAATGCAACAATCAAAGATGGAACAGTTATATGA 1596 0.4298 MDSACATLNGRHLAKVSEGIGRNRTSGFWGESTRGSVNTKRFLSVQSCKTSRTNRNLRNSKPGSGIARAVLTSDIDEDSMAFQGVPTFEKPEVDPKSVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLSRAYSFGNGMTFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVEHILILSGDHLYRMDYMDFVQRHVDTNADITVSCVPMDDSRASDYGLMKIDKTGRIIQFAEKPKGSDLKAMRVDTTLLGLLPQEAEKHPYIASMGVYVFRTETLLQLLRWKCSSCNDFGSEIIPSAVNEHNVQAYLFNDYWEDIGTIKSFFDANLALTEQPPKFEFYDPKTPFFTSPRFLPPTKVEKCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVELQDTMMMGADYYQTEYEIASLVAEGKVPIGVGANTKIRNCIIDKNAKIGRNVIIANTDGVQEADRAKEGFYIRSGITVTLKNATIKDGTVI* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0246 531 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 1 531 - -
Gso6g0246 531 SUPERFAMILY Nucleotide-diphospho-sugar transferases 98 492 IPR029044 -
Gso6g0246 531 Pfam Nucleotidyl transferase 100 377 IPR005835 GO:0009058|GO:0016779
Gso6g0246 531 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 1 531 IPR011831 GO:0005978|GO:0008878
Gso6g0246 531 CDD ADP_Glucose_PP 101 362 - -
Gso6g0246 531 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 195 203 IPR005836 GO:0005978|GO:0008878
Gso6g0246 531 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 88 396 IPR029044 -
Gso6g0246 531 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 99 495 IPR011831 GO:0005978|GO:0008878
Gso6g0246 531 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 310 320 IPR005836 GO:0005978|GO:0008878
Gso6g0246 531 CDD LbH_G1P_AT_C 399 525 - -
Gso6g0246 531 Gene3D Hexapeptide repeat proteins 397 531 - -
Gso6g0246 531 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 104 123 IPR005836 GO:0005978|GO:0008878
Gso6g0246 531 SUPERFAMILY Trimeric LpxA-like enzymes 393 531 IPR011004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0246 Gso-Chr6 2382492 2386960 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0267 4 2449542 2454475 Gso6g0246 6 2382492 2386960 GST
Gso14g0619 14 6083866 6088554 Gso6g0246 6 2382492 2386960 PCT
Gso17g2134 17 41028947 41033217 Gso6g0246 6 2382492 2386960 PCT
Gso6g0246 6 2382492 2386960 Gso14g0619 14 6083866 6088554 PCT
Gso6g0246 6 2382492 2386960 Gso17g2134 17 41028947 41033217 PCT