Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0235 ATGTCCAACTCTATTACCCATCTTCAAAACCAATTTGAGAACCAAGACCTTGATACTTATGGCTCTTCTATGAGGCACAACAATGCATCATTTCCTGAGGCATCATTGGGAGCATTTCCTACTAGCATTGGAGTAGTTGCTGAGGGCTCTGAGATAAGCCACACAAGGCATTTGATGGATCTTCTTGGAGCAGCAGCAAATGAGAGAAATCACCACCAAACTGCTCAAGGGCTTTCTCTTTCTTTAGGCTCTCACATGCTTGTTCCTTCTGATGAATACAGGCATCACCAAAGACCCTTAAACCCTGGTCTCATCAACCCCAATTACTTCATGTCTGGACAAGAGCCACGTGAGGCTTGTAACAACCCACCTGTGGAACAGCAGCATAATATAACCAGTGACTACTTTTTCAACACAGCTGGGAGTTGCACTTTTGCATCTTCATCTTCTTCTGCCCCTTTGAACCGCTCTCCTAATACCACCACCTCTTATGCTGCTGAGTCTTTTGCTGCTGTCATTGGGAACTCCAGGTACCTTAAACCGGTTCAGTCCCTTCTTGAAGATCTTGTTGATGTTGGTGGAAATGTGGTCGATAGAATCAACGACAAGTATGCTGAGAAGTTGTTTCGTGGGAGTAGAGGAAGTGCTAGGACACTTTCCTCAGAGTTGAGGAATAATGGTCATTTATTGGCTGGCAAACATGAACATCAAATCAAAATTGCAAGGTTGATTACTTTATTGGATGAGGTTGAGGGAAGGTGTGAGAAATACTACCATCAAATGGAAGAAGTGGTGTCATCTTTTGAGATGATAGCAGGTTTGGGAGCTGCAAAGAGTTACACTGCTTTGGCACTCCAAGCCATGTCAAGGCATTTCTGCAGCTTGAGAGATGCCATATTGTCACATATAAATGCTGAGAAAAGAAAACTCTTTCAGGATTTACCTAAGATCAGTAGTGGATTGTCTCAACTAAGCTTGTTTGATAGAGACAGCAGACAGAGTAGAATGTCTCTCCAACAACTTGGGGTGATCCAAAGCCAACGCCAAGTTTGGAGACCCATCAGAGGGTTGCCTGAAACCTCTGTGGCAATTCTTCGTTCTTGGCTCTTTGAACACTTTCTCCACCCTTATCCTAATGATTCTGAAAAGTTAATGCTGGCATCTCAGACTGGTTTAACTAAAAACCAAGTCTCAAATTGGTTCATAAATGCTCGAGTACGGCTATGGAAACCAATGATAGAAGAAATGTACAAAGAGGAGTTTGGAGAGTCTTCTGAAGACTCCAACCCGGCTGGTAACAACTACTTGACGAGGGAAGATACCACAGATTGTGTAGAGGATTGA 1344 0.4338 MSNSITHLQNQFENQDLDTYGSSMRHNNASFPEASLGAFPTSIGVVAEGSEISHTRHLMDLLGAAANERNHHQTAQGLSLSLGSHMLVPSDEYRHHQRPLNPGLINPNYFMSGQEPREACNNPPVEQQHNITSDYFFNTAGSCTFASSSSSAPLNRSPNTTTSYAAESFAAVIGNSRYLKPVQSLLEDLVDVGGNVVDRINDKYAEKLFRGSRGSARTLSSELRNNGHLLAGKHEHQIKIARLITLLDEVEGRCEKYYHQMEEVVSSFEMIAGLGAAKSYTALALQAMSRHFCSLRDAILSHINAEKRKLFQDLPKISSGLSQLSLFDRDSRQSRMSLQQLGVIQSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGESSEDSNPAGNNYLTREDTTDCVED* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0235 447 SMART HOX_1 351 415 IPR001356 GO:0003677
Gso6g0235 447 Gene3D - 346 426 - -
Gso6g0235 447 Pfam Homeobox KN domain 368 407 IPR008422 GO:0003677|GO:0006355
Gso6g0235 447 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 44 429 - -
Gso6g0235 447 CDD homeodomain 351 412 IPR001356 GO:0003677
Gso6g0235 447 MobiDBLite consensus disorder prediction 420 447 - -
Gso6g0235 447 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 44 429 - -
Gso6g0235 447 SMART prehox3 167 301 IPR006563 -
Gso6g0235 447 Pfam Associated with HOX 172 299 IPR006563 -
Gso6g0235 447 SUPERFAMILY Homeodomain-like 357 418 IPR009057 -
Gso6g0235 447 ProSiteProfiles 'Homeobox' domain profile. 370 411 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0235 Gso-Chr6 2278693 2281251 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso6g0235 POX 6.2e-39 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0256 4 2355848 2358585 Gso6g0235 6 2278693 2281251 GST
Gso6g0235 6 2278693 2281251 Gso17g2149 17 41142207 41146638 PCT