Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0234 ATGTATCCCAACCAAGCCTTTTCTTCAGGTTCTTATGCGGAGATGATGTCTGGGACTTCTCTGTTACCTCATGACTACAGTGAAACTGTAGGTGGAGGACAAAACGAGGTTAAGTTTATCACAGCAATGGGTGAGACAGTGACCATGCACTCTATTAATGGTCATTCCAATGCTGCAAATGGTGATCCGTCATGCAACTCTTTTGCTGGGGATTCCCACGTTGTTTCAAGGACACAAATGGGAATGGCAGATAGTGAGCAAAACGTAAATTGTCAGGGCCTATCTCTCAGTCTTGGGACACTCATGCCTTCTAATGCATCCGTCTCTCCATTTCAATACCAATATCACGACACTGGTCTCTTACCACTAATGAATGATTATCCAAATCCAAAGGGAGCCATGTCTCTCAAAAATGATGAGGGCAATAACCTACATAGGGAGTTTAGAAGTGCTGAATGCATGGCATCTGTGTCTTCTGGAGGCTTTCTTGACATGGTAAAAAAGGAGTGTTTTTACAACCCCCATGACCCCTCAATGTGTCTTAAAGAAGTCCCCTCTGATCTACCAGGCTACTCAAACAGTATTTTGAACTCTCAATACCTGAAGGCGGCACAAGATTTGCTTGATGAAATAGTTAGTGTCCGAAAGGCTTTGAAGCAATCTGGAATGGAAAAACAAGAGAACACTGGATTAGATGGCTCTAAAGATTCTGATGGAAAATCTACCAGTCAATCTATGCAAATGTCTTCAGGCCCTAATGGTTCCACTGCTAATGCTTCTAGTGAACTATCATCCGCAGAGCGGCAGAACTTGTTGGACAAGAAAACAAAGCTTTTGTCCATGTTGGATGAGGTAGATAAAAGATACAGACAGTACTGCCATCAGATGCAGATTGTGGTGTCATCTTTTGACATGGTTGCTGGCTGTGGAGCAGCAGAACCATATACCACACTTGCCTTAAGAACAATTTCTCGCCACTTTCGGTGTTTGCGTGATGCCATCAGTGGCCAAATTCAGGTGACCCAAAGAAGCCTTGGGGAGCAAGAAGGAATACCCCGTCTCCGCTATGTGGATCAGCAACTTAGACAACAAAAGGCACTTCAGCAACTTGGTGTAATGAGACAAGCTTGGAGGCCTCAGAGGGGTCTTCCTGAAAGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAACATTTTCTTCATCCTTACCCCAAGGATTCTGAGAAAATTATGCTGGCTAGGCAAACAGGCTTGACCAGAAACCAGGTGGCCAATTGGTTCATCAATGCAAGGGTGCGTCTCTGGAAGCCAATGGTTGAGGAAATGTACAAAGAGGAGTTTGGAGACTCCGAGATGAACTGCAACCTTTCATCTGAGAACAACACGGTCAAATGTAAAAAAGATGATCTTGTTCAAGAGTCTGATAACATAAACAACAATAATAAATGGGAAGAGACACAGGACAATTTAGTAACTGTTGACAGTGTCCAAGTCCAACCTCAAGCAGAACTGGATAGAGGGGTCAATGTAGAAAATGTGGTGATGGATTCTGGAACTGGGAAATTGCAGGGTGATCAAAACCAACAAAGGCTTGGCATGAACAACAACAACAACTTTTATTCTATCTCAACCAACCAGAATGATGGAGGCCTAATGGGTTGTTCTACTCATGCCACATATGATTTATCAGAGTTGGGTAACTTTACTGTGGGTAGCCACGTTTCCCTTGCATTGGAGTTGAGGAACTGTGAAAGTGATGGGTTTGCCATGTCTGATGATGCCATACGCAAACGACGTAATCAAGCATTGGCCTCTTCCCCGGAGACTGATTTGCTAGATTATCATTTCACGGATTCAGGAAAGCAACAACACAGGTTTGGCAATCCCCATTTGCTGCATGAGTTTGTCGTATGA 1914 0.4383 MYPNQAFSSGSYAEMMSGTSLLPHDYSETVGGGQNEVKFITAMGETVTMHSINGHSNAANGDPSCNSFAGDSHVVSRTQMGMADSEQNVNCQGLSLSLGTLMPSNASVSPFQYQYHDTGLLPLMNDYPNPKGAMSLKNDEGNNLHREFRSAECMASVSSGGFLDMVKKECFYNPHDPSMCLKEVPSDLPGYSNSILNSQYLKAAQDLLDEIVSVRKALKQSGMEKQENTGLDGSKDSDGKSTSQSMQMSSGPNGSTANASSELSSAERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTTLALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMNCNLSSENNTVKCKKDDLVQESDNINNNNKWEETQDNLVTVDSVQVQPQAELDRGVNVENVVMDSGTGKLQGDQNQQRLGMNNNNNFYSISTNQNDGGLMGCSTHATYDLSELGNFTVGSHVSLALELRNCESDGFAMSDDAIRKRRNQALASSPETDLLDYHFTDSGKQQHRFGNPHLLHEFVV* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0234 637 MobiDBLite consensus disorder prediction 235 267 - -
Gso6g0234 637 SUPERFAMILY Homeodomain-like 378 444 IPR009057 -
Gso6g0234 637 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 597 - -
Gso6g0234 637 Pfam Homeobox KN domain 394 433 IPR008422 GO:0003677|GO:0006355
Gso6g0234 637 SMART prehox3 189 336 IPR006563 -
Gso6g0234 637 CDD homeodomain 377 438 IPR001356 GO:0003677
Gso6g0234 637 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 29 597 - -
Gso6g0234 637 ProSiteProfiles 'Homeobox' domain profile. 374 437 IPR001356 GO:0003677
Gso6g0234 637 Gene3D - 374 451 - -
Gso6g0234 637 MobiDBLite consensus disorder prediction 221 267 - -
Gso6g0234 637 Pfam Associated with HOX 195 335 IPR006563 -
Gso6g0234 637 SMART HOX_1 377 441 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0234 Gso-Chr6 2272219 2276663 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso6g0234 POX 7.9e-51 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0255 4 2349822 2353702 Gso6g0234 6 2272219 2276663 GST
Gso17g2149 17 41142207 41146638 Gso6g0234 6 2272219 2276663 PCT
Gso6g0234 6 2272219 2276663 Gso14g0607 14 5941507 5946045 PCT