Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0229 ATGGACCTCGATCCTCGTCAATATGAAAACCTTGCTGTAAATGATAATGACATCCACAACATTGTTCTGTCATATCTTATACATAATTGCTACAAAGAATCAGTAGAATCATTCATTGCTTGCACTGGGGCAACGCAGCCGGCAGATTATTTGGAAGACATGGATAAAAGGAAAAGAATCTTTCACTTTGCACTAGAGGGAAATGCACTCAAGGCTATTGAGCTTACTGAACAGCTGGCAAAAGATATTCTAGAGAACAATAAGGATTTGCAGTTTGATCTACTAAGCCTTCATTTTGTTGAGCTTGTCTGCTCAAGGAAATGCACAGAAGCTTTGGAGTTTGCTCAGACCAAATTGGGCCCTTTCGGAAAGGAGCCCAAATATATGGAAAAGCTTGAAGACTTTATGGCCCTTCTTGCTTATAAGGAGCCAGAGAAATCCCCAATGTTTCATCTCCTTAGCTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCTATTCTTGCACACTTGAATCTTCCCAGTTACACAGCAATGGAGAGGCTAATACAGCAGGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAGGATGCACCTCCACCATTTTCCTTAAAGGATTTTCTCAGAAGTTGA 648 0.4105 MDLDPRQYENLAVNDNDIHNIVLSYLIHNCYKESVESFIACTGATQPADYLEDMDKRKRIFHFALEGNALKAIELTEQLAKDILENNKDLQFDLLSLHFVELVCSRKCTEALEFAQTKLGPFGKEPKYMEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAILAHLNLPSYTAMERLIQQATVVRQCLSQEAGKDAPPPFSLKDFLRS* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0229 215 Pfam CTLH/CRA C-terminal to LisH motif domain 54 192 IPR024964 -
Gso6g0229 215 SMART toby_final6 106 201 IPR013144 -
Gso6g0229 215 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 53 110 IPR006595 -
Gso6g0229 215 SMART ctlh 53 110 IPR006595 -
Gso6g0229 215 PANTHER VACUOLAR IMPORT AND DEGRADATION PROTEIN 30 8 214 - -
Gso6g0229 215 PANTHER RAN BINDING PROTEIN 9-RELATED 8 214 - -
Gso6g0229 215 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0229 Gso-Chr6 2209405 2212655 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0248 4 2298195 2301457 Gso6g0229 6 2209405 2212655 GST
Gso14g0603 14 5899321 5902723 Gso6g0229 6 2209405 2212655 PCT
Gso17g2152 17 41181003 41183893 Gso6g0229 6 2209405 2212655 PCT
Gso6g0229 6 2209405 2212655 Gso14g0603 14 5899321 5902723 PCT
Gso6g0229 6 2209405 2212655 Gso17g2152 17 41181003 41183893 PCT