Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0223 ATGGCTAATCCCTCACTCTTGTTCTTCAGTCTCCTCCTATTATCCGCCACCGTAGCCGCCGCCGAACGGATCGACGATGAAGACGACCTTCTGATCCGTCAAGTGGTGCCGGATGCGGAGGACCACCACCTGCTCAACGCGGAGCACCACTTCTCCGCCTTCAAGACAAAGTTCGGCAAGACCTACGCCACGCAGGAGGAGCACGACCACCGCTTCCGTATCTTCAAGAACAACTTGCTCCGCGCCAAGTCACACCAGAAATTGGATCCCTCCGCCGTCCACGGCGTCACCAGGTTCTCCGATCTCACTCCGGCGGAGTTTCGCCGCCAGTTCCTCGGCCTGAAGCCGCTCCGCCTTCCCTCTGACGCTCAGAAGGCTCCGATCCTACCGACCAACGACCTCCCTACCGATTTCGATTGGCGCGAACATGGAGCCGTTACTGGAGTAAAAAATCAGGGTTCGTGCGGATCGTGTTGGTCCTTTAGCGCCGTTGGAGCGTTGGAAGGTGCTCATTTTCTTTCTACAGGTGAGCTCGTGAGCCTTAGCGAGCAACAACTTGTGGATTGCGATCATGAGTGTGATCCGGAAGAGCGTGGAGCATGTGACTCGGGTTGTAACGGTGGGTTGATGACCACTGCATTTGAGTACACACTCCAGGCTGGTGGACTAATGCGAGAAAAGGATTATCCTTACACTGGAAGAGACCGTGGTCCCTGCAAATTTGACAAGAGCAAAGTTGCTGCTTCCGTAGCTAACTTCAGTGTGGTTTCCCTTGATGAAGAACAAATTGCAGCAAATTTGGTCCAGAATGGTCCTCTTGCAGTTGGTATCAATGCAGTTTTTATGCAGACATATATTGGTGGCGTCTCATGCCCATATATCTGCGGCAAGCATTTGGATCACGGGGTTCTTTTGGTGGGGTATGGTTCTGGTGCTTATGCTCCAATTCGTTTTAAGGAAAAGCCTTACTGGATCATAAAGAATTCATGGGGGGAGAGCTGGGGAGAAGAGGGATATTACAAGATCTGCAGAGGTCGCAATGTATGTGGGGTGGACTCGATGGTCTCAACTGTCGCTGCTATACATGTTTCTAACAATTAA 1101 0.5204 MANPSLLFFSLLLLSATVAAAERIDDEDDLLIRQVVPDAEDHHLLNAEHHFSAFKTKFGKTYATQEEHDHRFRIFKNNLLRAKSHQKLDPSAVHGVTRFSDLTPAEFRRQFLGLKPLRLPSDAQKAPILPTNDLPTDFDWREHGAVTGVKNQGSCGSCWSFSAVGALEGAHFLSTGELVSLSEQQLVDCDHECDPEERGACDSGCNGGLMTTAFEYTLQAGGLMREKDYPYTGRDRGPCKFDKSKVAASVANFSVVSLDEEQIAANLVQNGPLAVGINAVFMQTYIGGVSCPYICGKHLDHGVLLVGYGSGAYAPIRFKEKPYWIIKNSWGESWGEEGYYKICRGRNVCGVDSMVSTVAAIHVSNN* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0223 366 Pfam Papain family cysteine protease 134 357 IPR000668 GO:0006508|GO:0008234
Gso6g0223 366 Pfam Cathepsin propeptide inhibitor domain (I29) 51 107 IPR013201 -
Gso6g0223 366 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 299 309 IPR025660 -
Gso6g0223 366 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 323 342 IPR025661 -
Gso6g0223 366 SMART pept_c1 134 359 IPR000668 GO:0006508|GO:0008234
Gso6g0223 366 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 152 163 IPR000169 -
Gso6g0223 366 PANTHER CYSTEINE PROTEASE RD19C-RELATED 29 360 - -
Gso6g0223 366 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 29 360 - -
Gso6g0223 366 PRINTS Papain cysteine protease (C1) family signature 152 167 IPR000668 GO:0006508|GO:0008234
Gso6g0223 366 PRINTS Papain cysteine protease (C1) family signature 301 311 IPR000668 GO:0006508|GO:0008234
Gso6g0223 366 PRINTS Papain cysteine protease (C1) family signature 323 329 IPR000668 GO:0006508|GO:0008234
Gso6g0223 366 Gene3D Cysteine proteinases 21 359 - -
Gso6g0223 366 CDD Peptidase_C1A 135 358 IPR039417 -
Gso6g0223 366 SUPERFAMILY Cysteine proteinases 48 359 IPR038765 -
Gso6g0223 366 SMART Inhibitor_I29_2 51 107 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0223 Gso-Chr6 2156074 2158065 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0244 4 2241730 2243481 Gso6g0223 6 2156074 2158065 GST
Gso14g1824 14 50606587 50609386 Gso6g0223 6 2156074 2158065 PCT
Gso17g2159 17 41232155 41235229 Gso6g0223 6 2156074 2158065 PCT
Gso6g0223 6 2156074 2158065 Gso14g1824 14 50606587 50609386 PCT
Gso6g0223 6 2156074 2158065 Gso17g2159 17 41232155 41235229 PCT