Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0071 ATGAAGATCCAGTGTGATGTGTGTGACAAAGTGGAAGCCTCCGTCTTCTGTCCTGCAGATGAAGCTGCTCTTTGCCATAGCTGTGATCGCACCATTCACCGCGCCAACAAGCTTGCAACCAAACACGCCCGTTTCTCTCTCCACTACCCCACCTCCAAAGACTTCCCTCTTTGTGATATATGCCAAGAGAGGCGTGCATATCTATTTTGCCAAGAAGACAGGGCGTTGTTATGCAGGGAATGCGACGTTCCTATCCACAGAGCCAATGAGCATACCCAAAAGCATAACAGGTTTCTTCTCACGGGTGTGAAGCTCTCTGGTACTTGTTTAGATCCTGCTTCGTCCTCCACCAATTACACCAATAATAATAGAGTCACTGGCTCTGAAGGAAGAAACGACGCTCGATCTAGAATGAACAGACCCAGATCATCAGTTTCCAATGAAGAAAATGCAAGTAATTCTTCTTGCAAGGTTGAAGACAACGTGGCTAGTGACACTGGTTCGATTTCAACTAGCAGCATTTCTGAGTACTTGATTGAAACAATACCCGGTTACTGTTTTGAAGACCTCCTTGATGCTTCGTTTGCACCTAATGGTTTCTGTAAGAAGCAGAACTTTGATCATCCCTGGGCGTTTCAGGACCAAAAGCGAACAAGTGGAGACACTATGGCCGTGCCGTTCCTGAAACTAGTCATCCATTGA 702 0.463 MKIQCDVCDKVEASVFCPADEAALCHSCDRTIHRANKLATKHARFSLHYPTSKDFPLCDICQERRAYLFCQEDRALLCRECDVPIHRANEHTQKHNRFLLTGVKLSGTCLDPASSSTNYTNNNRVTGSEGRNDARSRMNRPRSSVSNEENASNSSCKVEDNVASDTGSISTSSISEYLIETIPGYCFEDLLDASFAPNGFCKKQNFDHPWAFQDQKRTSGDTMAVPFLKLVIH* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0071 233 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 209 - -
Gso6g0071 233 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Gso6g0071 233 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Gso6g0071 233 MobiDBLite consensus disorder prediction 114 129 - -
Gso6g0071 233 CDD Bbox1_BBX-like 57 100 - -
Gso6g0071 233 MobiDBLite consensus disorder prediction 114 160 - -
Gso6g0071 233 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 209 - -
Gso6g0071 233 CDD Bbox1_BBX-like 5 47 - -
Gso6g0071 233 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gso6g0071 233 SMART bboxneu5 53 100 IPR000315 GO:0008270
Gso6g0071 233 MobiDBLite consensus disorder prediction 139 160 - -
Gso6g0071 233 Gene3D Classic Zinc Finger 1 100 - -
Gso6g0071 233 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gso6g0071 233 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0071 Gso-Chr6 726602 728378 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gso6g0071 zf-B_box 2.6e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0080 4 740055 741756 Gso6g0071 6 726602 728378 GST
Gso14g1826 14 50657713 50659544 Gso6g0071 6 726602 728378 PCT
Gso17g2161 17 41278153 41280013 Gso6g0071 6 726602 728378 PCT
Gso6g0071 6 726602 728378 Gso14g1826 14 50657713 50659544 PCT
Gso6g0071 6 726602 728378 Gso17g2161 17 41278153 41280013 PCT