Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1630 ATGCCGGCTTGGTGGAATAGAAAGTGGAGCAAGAGCAAGGAGGAGGATGAGGAGGATGAGCCACGTGCCGGTTTTCACTTGAATTTTATGAAATCTCCGGTTTCTGTTACATCGTCTAAGAGCAAGAGTAAGACCACGACGCCGACGCCGATGAAGAAGAAGAAGAAGCCCAAGAGCTTCGACGAGAAGGTGGAGGGTGTTCCCTTGCCTCGTCCGGCGCATAGTCACGCCGATCCTCTTGGATCTGTTTCGGTGTCGGGGGGTTCCAGCGTCAGCTCCTCCACCTCCTTCGACGATCATCCAATTTCGTCTCCCAACACCAACCCCAACCCCAACAGAGGACATGATGAGGTTAGGGTCAATGTAAGGTCAAAAAGTCCGGGTCCTGGGTCAAGAGGACCTACCAGTCCTACCTCACCGCTTCATCAAAGGTTGAATAATTTGAGCCTTGACTCTCCTACGGGGAGTCAGTGTCATCCATTACCTCTTCCACCTGGCTCTCCAACTAGTCCTTCTTCTGTGCTTTCCAACGCACGAGCAAATGGACATTTGGAAAATGCTACTAGCAATGTGTCCAAGTGGAGAAAAGGAAAGCTTCTAGGACGGGGAACATTTGGGCATGTATATCTGGGATTCAATAGTGAAAATGGACAAATGTGTGCAATAAAAGAGGTCAAGGTTGTCTCTGATGATCAAACATCAAAAGAGTGCCTCAAACAACTTAACCAGGAGATAAATTTGCTAAATCAGCTTTCACACCCTAATATTGTTCAATACCATGGGAGTGAACTGGTAGAAGAATCACTTTCTGTATATTTGGAATATGTCTCTGGTGGTTCTATCCATAAATTACTTCAGGAGTATGGTTCATTTAAGGAGCCTGTTATTCAAAATTATACCAGACAGATTGTCTCTGGACTTGCCTATCTGCATGGAAGAAATACAGTACACAGGGATATTAAAGGGGCGAACATACTAGTTGATCCTAATGGTGAAATCAAACTGGCAGACTTTGGAATGGCTAAACATATAAATTCTTCTGCCTCAATGCTTTCATTCAAAGGAAGTCCATACTGGATGGCACCTGAGGTTGTAATGAATACAAATGGCTATAGTCTTCCAGTTGATATATGGAGCTTGGGATGCACAATTATTGAAATGGCAACATCAAAACCTCCATGGAATCAGTATGAAGGGGTAGCTGCCATATTTAAAATTGGGAACAGCAAAGATATGCCTGAAATCCCCGAGCATCTTTCGAACGATGCAAAAAATTTCATCAAGCTATGCTTACAAAGAGACCCATTAGCTCGCCCGACAGCCCATAAGTTACTAGACCACCCCTTCATTCGAGATCAATCGGCAACAAAAGCTGCAAATGTCAGCATAACCAGAGATGCTTTTCCTTGCATGTTTGATGGAAGCCGGACACCGCCTGTGTTAGAGTCCCATTCCAACCGAACAAGTATAACTTCTCTTGATGGAGATTTTGCATCAAAGCCAGCTCTTGCAGCACCACGAGCATTAAGGAGTCCTAGAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTCTTCAAGTCCATTGCGACGGTATGGGCCAACGCATCAGAGCTGTTTTTTCTCTCCTCCTCATCCAGCTTACACAATAATGGGACAAAGTAGTTACACTTTGAATGACATATCATCATATCCAATGACATCAAATGCCACGTTTGCTCTTGATCCTTGGCATGAAACATCTCGATACAGAGCCAATACACCACCTGGTGGATCTCCAAGAATGAGACTCATTTGA 1803 0.4454 MPAWWNRKWSKSKEEDEEDEPRAGFHLNFMKSPVSVTSSKSKSKTTTPTPMKKKKKPKSFDEKVEGVPLPRPAHSHADPLGSVSVSGGSSVSSSTSFDDHPISSPNTNPNPNRGHDEVRVNVRSKSPGPGSRGPTSPTSPLHQRLNNLSLDSPTGSQCHPLPLPPGSPTSPSSVLSNARANGHLENATSNVSKWRKGKLLGRGTFGHVYLGFNSENGQMCAIKEVKVVSDDQTSKECLKQLNQEINLLNQLSHPNIVQYHGSELVEESLSVYLEYVSGGSIHKLLQEYGSFKEPVIQNYTRQIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSASMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTIIEMATSKPPWNQYEGVAAIFKIGNSKDMPEIPEHLSNDAKNFIKLCLQRDPLARPTAHKLLDHPFIRDQSATKAANVSITRDAFPCMFDGSRTPPVLESHSNRTSITSLDGDFASKPALAAPRALRSPRDNTRMITSLPVSPSSSPLRRYGPTHQSCFFSPPHPAYTIMGQSSYTLNDISSYPMTSNATFALDPWHETSRYRANTPPGGSPRMRLI* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1630 600 Gene3D Transferase(Phosphotransferase) domain 1 191 469 - -
Gso5g1630 600 ProSitePatterns Protein kinases ATP-binding region signature. 200 223 IPR017441 GO:0005524
Gso5g1630 600 Pfam Protein kinase domain 195 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1630 600 MobiDBLite consensus disorder prediction 31 46 - -
Gso5g1630 600 CDD STKc_MEKK1_plant 193 450 - -
Gso5g1630 600 MobiDBLite consensus disorder prediction 54 69 - -
Gso5g1630 600 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 581 - -
Gso5g1630 600 MobiDBLite consensus disorder prediction 128 156 - -
Gso5g1630 600 ProSiteProfiles Protein kinase domain profile. 194 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1630 600 MobiDBLite consensus disorder prediction 8 25 - -
Gso5g1630 600 PANTHER MAP KINASE KINASE KINASE 1 581 - -
Gso5g1630 600 SMART serkin_6 194 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1630 600 MobiDBLite consensus disorder prediction 82 114 - -
Gso5g1630 600 SUPERFAMILY Protein kinase-like (PK-like) 192 540 IPR011009 -
Gso5g1630 600 MobiDBLite consensus disorder prediction 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1630 Gso-Chr5 39640326 39645908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1630 1 513 MAP Kinase Kinase Kinase AT1G53570 56.906 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso5g1630 Pkinase 1.8e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1630 K04421 - gmx:100787064 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1630 5 39640326 39645908 Gso4g1787 4 48067477 48073315 PCT
Gso5g1630 5 39640326 39645908 Gso6g1287 6 12589828 12595775 PCT
Gso4g1787 4 48067477 48073315 Gso5g1630 5 39640326 39645908 PCT
Gso6g1287 6 12589828 12595775 Gso5g1630 5 39640326 39645908 PCT