Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1348 ATGGCTGAAGCACAAAGTGGCCAAGCTAGTGAAGGGATTAAACTGTTTGGAACAACGATTACGTTGCATGGAAGAGAAAGAAAAGAAGATAGAAATGATAGTGAAGATGGGACAGAGGAGATAAAGAGACCTGATAAGATCATACCATGCCCAAGATGCAAGAGCATGGAAACCAAGTTTTGCTACTTCAATAACTACAACGTTAATCAGCCCAGACATTTCTGCAAGGGATGCCAGAGATACTGGACGGCTGGTGGGGCCCTTCGCAACGTGCCAGTAGGAGCTGGCAGGCGAAAGGTCAAACCGCAGTTTGGTCAGGAGGAGAGGTTGGCTTTGGATGAATGGCATGTTGCCGCCGTGGCTCATGGTGATTTCCGGCAGCTTTTTCCATCTAAAAGACGGAGGATGAGCTCAGCTCAGCATGAAAGTCAAAGAAAGTTTGTTATCATCCACGAAATCACAGAACATCCAAATCAGATAGAAACAAAGGAGGCTTGA 498 0.4618 MAEAQSGQASEGIKLFGTTITLHGRERKEDRNDSEDGTEEIKRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKVKPQFGQEERLALDEWHVAAVAHGDFRQLFPSKRRRMSSAQHESQRKFVIIHEITEHPNQIETKEA* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1348 165 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
Gso5g1348 165 PANTHER CYCLIC DOF FACTOR 2 4 105 IPR045174 GO:0003700|GO:0006355
Gso5g1348 165 PANTHER CYCLIC DOF FACTOR 2 108 141 IPR045174 GO:0003700|GO:0006355
Gso5g1348 165 MobiDBLite consensus disorder prediction 20 43 - -
Gso5g1348 165 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 4 105 - -
Gso5g1348 165 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 108 141 - -
Gso5g1348 165 MobiDBLite consensus disorder prediction 21 43 - -
Gso5g1348 165 Pfam Dof domain, zinc finger 46 101 IPR003851 GO:0003677|GO:0006355
Gso5g1348 165 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1348 Gso-Chr5 36947136 36949001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1348 8 135 C2C2-Dof Transcription Factor Family AT1G29160 55.152 2.52e-53 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso5g1348 zf-Dof 6.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1348 - - gmx:100527802 347.821