Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0317 ATGGGTTTTTCCTCTCTCCACGTCTGCATGGACTCATCAGATCACTGGATGCAGGGCACAATTCACGAGGAGTGTGGGGTGGATAATTCTTCTTCACCATCTGGCGAAATGCTTCCATGCTCGAGGCCAATGACAGAGAGTAGGCTAAGACCCCCCCAAGAGCAAGCCCTCAAGTGCCCTAGGTGTGAATCAACACACACCAAGTTCTGCTACTACAACAACTACAGTCTCTCCCAGCCCAGGTACTTCTGCAAGACATGTAGAAGGTACTGGACCCAAGGGGGCACTCTTAGGAACATTCCTGTTGGTGGTGGTTGCAGAAAAAACAAGAAAGTTTCTACCAAGAAACACAATGACCAACACCAACCAGCTGTTAATCAAAACCAACCTCACCCTGGACCCTCTTATCTTCATAATCACAAAGATCTTCAACTTCCCTATCTTGATGTGCAATTTCCCCACCTCAACAATTTACTTGGGACTAATGCTGGGGCACTGCAGGGAAACCCTAGTTTTATGGAGAGTAAGTATAACATGGGCATGCTTGAGAACCCTAGGCCTATTGACTTCATGGAAAGCAGGTTGGATGGTATGAGTATGATTAGGGGTTCCACTAGGAGTTTTGAGCTTCTTGAAAACAGTGATATGAGTGTGGGTGGTGGTGTTGGGTTTGGTGATGTGAGTGGCTACAATGGATTGCCATTGAATTATCAAGGTCTTTCGTCTTCAGCATTTGGAGGCATGTCTCTAGATGGAAGCATTAACAATGTTGGAACTTATATAATGGACTCTTGCCAGCGACTTATGTTGCCCTATGATGGAGGTGACAACACCCTCAATGGTTCAATTGATGTGAAGCCAAACCCTAAGCTGTTGTCCCTTGAATGGCAAGATCAGGGTTGCTCTGATGCTGAAAAATTGTCACTGGGATATCTTAATGGTTCAGGATCATGGACCGCCTATGGATCTTCCACAGCAAACCCTTTGGTCTAG 993 0.4602 MGFSSLHVCMDSSDHWMQGTIHEECGVDNSSSPSGEMLPCSRPMTESRLRPPQEQALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNIPVGGGCRKNKKVSTKKHNDQHQPAVNQNQPHPGPSYLHNHKDLQLPYLDVQFPHLNNLLGTNAGALQGNPSFMESKYNMGMLENPRPIDFMESRLDGMSMIRGSTRSFELLENSDMSVGGGVGFGDVSGYNGLPLNYQGLSSSAFGGMSLDGSINNVGTYIMDSCQRLMLPYDGGDNTLNGSIDVKPNPKLLSLEWQDQGCSDAEKLSLGYLNGSGSWTAYGSSTANPLV* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0317 330 MobiDBLite consensus disorder prediction 106 134 - -
Gso5g0317 330 MobiDBLite consensus disorder prediction 27 52 - -
Gso5g0317 330 Pfam Dof domain, zinc finger 55 111 IPR003851 GO:0003677|GO:0006355
Gso5g0317 330 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Gso5g0317 330 PANTHER - 15 320 - -
Gso5g0317 330 MobiDBLite consensus disorder prediction 119 134 - -
Gso5g0317 330 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
Gso5g0317 330 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 320 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0317 Gso-Chr5 3307498 3310053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0317 1 301 C2C2-Dof Transcription Factor Family AT5G62940 40.419 9.03e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso5g0317 zf-Dof 1.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0317 - - gmx:100815061 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0317 5 3307498 3310053 Gso17g0753 17 6953726 6956634 GST
Gso5g0317 5 3307498 3310053 Gso4g1546 4 44746392 44748832 PCT
Gso5g0317 5 3307498 3310053 Gso6g1530 6 15667407 15669802 PCT
Gso4g1546 4 44746392 44748832 Gso5g0317 5 3307498 3310053 PCT
Gso6g1530 6 15667407 15669802 Gso5g0317 5 3307498 3310053 PCT