Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0215 ATGCACGAAATTAGAGACCCTGCAATTAGGCTTTTCGGTCAGAAGATCCCTTTCCCTGAAGATGTTGTTGTTGACAAAGAAGAAAAAGAAATAGAAAGTGGCGAGGAAAGAGAACAAGAGATGGAAAAATATGAAGACCAAGGACACAAGGATGCTGGAGTTGAAAATGTTACTGAGGAAGAGCTAGAAGTTGATCCTCCTCCAAATGCTGAAGAGACTAAGAATTCAGGCTCATCCCCTGAGGCTATTGTGAACCCCAAAACACCTTCCATAGAAGAAGAAACAGAAAAATCAAAAGGTGACAAAACAGAGAAGGAACAAGGTGATGCAGCCAACTCACAAGAGAAAACCCTGAAGAAGCCAGATAAAGTGCTACCATGCCCCCGCTGCAAAAGCATGGACACTAAATTCTGTTACTACAACAACTACAATGTCAACCAGCCGCGTTATTTCTGCAAAGCCTGTCAAAGATACTGGACTGCAGGTGGCACCATGAGGAATGTTCCTGTGGGGGCAGGACGGCGAAAGAACAAGAACTCTACCTCCCATTATCGCCACATCACTATCTCTGAGGCCCTTCAAGCAGCTAGAATTGATTCTCATCTTCCACCTTTGAAAGGCAATGGTAGAGTCCTCAGCTTTGGATTAGATGCACATGCACCTATTTGTGATTCCATGGCATCTGTCAACAATCTTGGAGAGAAAAAGCCTCTCAATTGCACAAGAAATGGGTTTCATCATGGCTTTGAGGATCAAAGACTCCCCCCCGTTCCTTGCAAAAGTGGGGAAAATGGTGATGACTCTTCAACTACATCCTCCATCACAGTTTCAAGTTCCAAGGGAGAAAATAACAAAAACACCTTCCAACAACAATCAGTGCCCCAAAATCATGGTTTCCTTCCTCAACTTCCATGTATTCCTGGTGTTTCTTGGCCCTATACATGGAATTCTCCAGTTCCTCCACCTGCTATGTGTCCTTCAGGATTTCCCCTACCATTCTATCCTGCTACATTTTGGAACTGTGGCATGCCAGGGAATTGGAATGTTCCATTGTTTTCCTCACATTCATCTGCTTCAAACCTCGAGTCTCGAAGCTCCAGTCCAAATTCTCCAACTTTGGGGAAGCACTCGCGCGACGGTGACATGATTAAGCAATACTCTTTGCCTAAAGAAGAAGCTTCAAAGCCAAGAAACGGGGGTGTTTTGGTTCCCAAAACGTTGAGAATTGATGATCCAAGTGAGGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATTAAGAATGAGTCAGTGAGTGGTGGAGGTATGTTTAAGGCCTTCCAATCAAAGAAAAATGAAAAGAATCATGTTGAAGCCTCTCCATTGTTGATGGCTAACCCTGCAGCTTTATCTAGATCCCTCAATTTTCATGAAAACTCCTGA 1422 0.4388 MHEIRDPAIRLFGQKIPFPEDVVVDKEEKEIESGEEREQEMEKYEDQGHKDAGVENVTEEELEVDPPPNAEETKNSGSSPEAIVNPKTPSIEEETEKSKGDKTEKEQGDAANSQEKTLKKPDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSTSHYRHITISEALQAARIDSHLPPLKGNGRVLSFGLDAHAPICDSMASVNNLGEKKPLNCTRNGFHHGFEDQRLPPVPCKSGENGDDSSTTSSITVSSSKGENNKNTFQQQSVPQNHGFLPQLPCIPGVSWPYTWNSPVPPPAMCPSGFPLPFYPATFWNCGMPGNWNVPLFSSHSSASNLESRSSSPNSPTLGKHSRDGDMIKQYSLPKEEASKPRNGGVLVPKTLRIDDPSEAAKSSIWATLGIKNESVSGGGMFKAFQSKKNEKNHVEASPLLMANPAALSRSLNFHENS* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0215 473 ProSiteProfiles Zinc finger Dof-type profile. 125 179 IPR003851 GO:0003677|GO:0006355
Gso5g0215 473 Coils Coil 24 44 - -
Gso5g0215 473 Pfam Dof domain, zinc finger 122 179 IPR003851 GO:0003677|GO:0006355
Gso5g0215 473 MobiDBLite consensus disorder prediction 357 380 - -
Gso5g0215 473 ProSitePatterns Zinc finger Dof-type signature. 127 163 IPR003851 GO:0003677|GO:0006355
Gso5g0215 473 MobiDBLite consensus disorder prediction 357 374 - -
Gso5g0215 473 MobiDBLite consensus disorder prediction 263 289 - -
Gso5g0215 473 MobiDBLite consensus disorder prediction 90 123 - -
Gso5g0215 473 MobiDBLite consensus disorder prediction 20 57 - -
Gso5g0215 473 MobiDBLite consensus disorder prediction 251 289 - -
Gso5g0215 473 MobiDBLite consensus disorder prediction 71 85 - -
Gso5g0215 473 MobiDBLite consensus disorder prediction 1 123 - -
Gso5g0215 473 PANTHER CYCLIC DOF FACTOR 2 1 472 IPR045174 GO:0003700|GO:0006355
Gso5g0215 473 PANTHER CYCLIC DOF FACTOR 1 1 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0215 Gso-Chr5 2258870 2261657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0215 1 471 C2C2-Dof Transcription Factor Family AT3G47500 49.084 6.29e-126 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso5g0215 zf-Dof 3.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0215 - - gmx:100817354 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0215 5 2258870 2261657 Gso17g0848 17 7954732 7958016 GST
Gso1g0425 1 5819618 5823193 Gso5g0215 5 2258870 2261657 PCT
Gso2g0912 2 10409080 10412831 Gso5g0215 5 2258870 2261657 PCT