Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0148 ATGCAGGAAATACACACCATGGGCGGAGGGAGGTTTTTCTCCGGCGACCGGAGGCTCCGACCCCACCATCAGAGCCAGCAGGCCCTGAAGTGCCCTCGCTGCGACTCCCTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCACAGCCCCGTCACTTCTGCAAAAACTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGTTGCCGCAAATCCAAACGCTCCTCCAAACCCACCAAAACATCCTCCCAAACCGCGTCACCGGACCCCGACCACCACAACAACAACACCAACTCTCACTCCAGCAGCGGGAGCTCCAGCCTCACCGCCGCGGCCGCCACCGCCACCACCACCACCACCACCGAGGCCGTGTCGGCGCCGGAGACTCTAAACTTGGATTCCAACAACAACAACAACAACATGCAAGAGTCAAAGTTGTTGATCCCTGCTTTGGAAACAAATCCTCTGGAGCACGGAACAGGGGACTGCGGTGGTATCTTCTCTGAAATCGGTCCTTTCACCAGTTTGATCACTACTACTACTTCCACTAACGAGCCATTGGCGTTCGGGTTCGGTAACTCCACTCTCCCCGATGCGTCGTCGTTTCAGTGGCTCCACCAGAAAGTTAGCAGCAGCAGCAACGAAGAGTTGAAGTTACCCGAGAGTTCCTTGCTCGATCACACCGTTGATTTTCATAGTAAAATCAGCCACGGGGGAGGATTCGGATCGTTGGATTGGCAGGGCGGTGCAGATCAAGGTTTGTTTGATCTTCCTAACACCGTTGATCACGCTTACTGGAGTCACACTCACTGGTCTGACCACGACAATTCTACTCTCTTTCATCTTCCCTGA 879 0.5552 MQEIHTMGGGRFFSGDRRLRPHHQSQQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSSKPTKTSSQTASPDPDHHNNNTNSHSSSGSSSLTAAAATATTTTTTEAVSAPETLNLDSNNNNNNMQESKLLIPALETNPLEHGTGDCGGIFSEIGPFTSLITTTTSTNEPLAFGFGNSTLPDASSFQWLHQKVSSSSNEELKLPESSLLDHTVDFHSKISHGGGFGSLDWQGGADQGLFDLPNTVDHAYWSHTHWSDHDNSTLFHLP* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0148 292 MobiDBLite consensus disorder prediction 73 150 - -
Gso5g0148 292 Pfam Dof domain, zinc finger 27 83 IPR003851 GO:0003677|GO:0006355
Gso5g0148 292 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Gso5g0148 292 MobiDBLite consensus disorder prediction 87 150 - -
Gso5g0148 292 PANTHER DOF ZINC FINGER PROTEIN 4 16 279 - -
Gso5g0148 292 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 279 IPR045174 GO:0003700|GO:0006355
Gso5g0148 292 MobiDBLite consensus disorder prediction 1 29 - -
Gso5g0148 292 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0148 Gso-Chr5 1604493 1606085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0148 16 292 C2C2-Dof Transcription Factor Family AT5G60850 43.056 1.63e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso5g0148 zf-Dof 2.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0148 - - gmx:100800458 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0148 5 1604493 1606085 Gso17g0690 17 6364751 6366230 GST
Gso5g0148 5 1604493 1606085 Gso4g1332 4 38298034 38299738 PCT
Gso4g1332 4 38298034 38299738 Gso5g0148 5 1604493 1606085 PCT