Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2089 ATGCCAAATCCAAAGCACATTATTCTGCAGAGCTTTGTCTTCCTCTGCCTGCTTCTTCAGGCATCGTCAAAATCCACGATCGAGCCATGCTCAAACTCCGACTCATGCAACGCGCTTCTGGGCTACACCCTCTACACGGACCTCAAAGTCTCCGAGGTGGCGTCGCTGTTCCAAATCGACCCCATCTCGCTCCTCACCGCGAACGCCATCGACATCTCCTACCCCGACGTCGAGCACCACATCCTCCCCTCCAAGCTCTTCCTGAAAATTCCCATCTCCTGCTCTTGCGTCGACGGCATTCGCAAATCCGTCGCTACTCACTACAAGACCCGCCCCTCCGACACCCTCTCCTCCATCGCCGACGCCGTCTACGCCGGCCTCGTCTCCTCCGACCAGCTCCGCGAGGCCAATTCCATCTCCGACCCTTCGGTTCTCGATGTCGGACAGAACCTCGTCGTTCCTCTTCCTTGCACGTGCTTCAACGGCTCCGATAACTCTCTCCCCGCGATTTACCTCTCTTATGTTGTTCGCCCCGTTGATACCCTCGCTGCCATTGCTGCTAGGTACTTCACCACCCTCACTGATTTGATGAATGTTAATGCCATGGGAAGCACTGCTATTAACGATGGCGATATCCTCGCTGTTCCAATTCCCGCTTGTGCTTCGAATTTTCCGAAATCCGCCTCTGATTTTGGCTTGCTTGTCCCTAATGGAAGCTATGCCATTACCGCGGGGCACTGTGTGCAATGTAGCTGTGGACCCAAAAACCTTGATTTGTACTGTATGCCGGCTTCTCTGGCTGTTTCTTGCTCCAGCATGCAATGTAGAGGCAGCAACCTTATGCTTGGGAATGTTACAGTGCAGCAGACTAGTGGTGGTTGCAATGTTACGTCTTGCAATTATGATGGCATTGTTAATGGCAGCATTGTAACAACGTTGTCCCCCTCTCTTCAGCCTCGATGTCCAGGGCTGCAGGAATTCCCTCCCCTTGTTGCTCCACCTACAACCGTTGCAAGGGACACAGTGTTTGCACCAGCACCAGCACCACTGTTCGATGGAGCTGGTCCAGCATCACCCAAATCCTCGCTGGTGCCTTCAGCGGGGCTTCCAGGAGGATTCTCTCCTGCAAATGGCCCTATTAGCGGCATTTCTTCCGGGGCTTCTGTTGCATGCTCCTTGGTGAAACCATTGCCCACTTTGACGAATGCACTTGTGTTATTGCTTGTCAAGTTGATGATACCTGTGGCATTGTAA 1254 0.5327 MPNPKHIILQSFVFLCLLLQASSKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPISLLTANAIDISYPDVEHHILPSKLFLKIPISCSCVDGIRKSVATHYKTRPSDTLSSIADAVYAGLVSSDQLREANSISDPSVLDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVRPVDTLAAIAARYFTTLTDLMNVNAMGSTAINDGDILAVPIPACASNFPKSASDFGLLVPNGSYAITAGHCVQCSCGPKNLDLYCMPASLAVSCSSMQCRGSNLMLGNVTVQQTSGGCNVTSCNYDGIVNGSIVTTLSPSLQPRCPGLQEFPPLVAPPTTVARDTVFAPAPAPLFDGAGPASPKSSLVPSAGLPGGFSPANGPISGISSGASVACSLVKPLPTLTNALVLLLVKLMIPVAL* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2089 417 Pfam LysM domain 174 216 IPR018392 -
Gso4g2089 417 Pfam LysM domain 108 154 IPR018392 -
Gso4g2089 417 SMART LysM_2 173 216 IPR018392 -
Gso4g2089 417 SMART LysM_2 107 154 IPR018392 -
Gso4g2089 417 Gene3D LysM domain 100 159 IPR036779 -
Gso4g2089 417 Gene3D LysM domain 160 227 IPR036779 -
Gso4g2089 417 SUPERFAMILY LysM domain 106 155 IPR036779 -
Gso4g2089 417 SUPERFAMILY LysM domain 172 217 IPR036779 -
Gso4g2089 417 CDD LysM 106 153 IPR018392 -
Gso4g2089 417 ProSiteProfiles LysM domain profile. 172 215 IPR018392 -
Gso4g2089 417 CDD LysM 173 215 IPR018392 -
Gso4g2089 417 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 1 398 - -
Gso4g2089 417 ProSiteProfiles LysM domain profile. 106 153 IPR018392 -
Gso4g2089 417 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 1 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2089 Gso-Chr4 51320929 51323712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2089 1 392 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 69.674 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2089 - - gmx:100808966 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2089 4 51320929 51323712 Gso4g2089 4 51320929 51323712 ECH
Gso4g2089 4 51320929 51323712 Gso6g0953 6 9183731 9186472 GST