Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2006 ATGTTCCCACGCAGCTTTAACATTAGCGGCGGCGATGCGGGGCTTCCACAAATGTTGCATCCTCGTCACATGGTAACTCCAATGGAAGAACAACAACGTTCGAGGTGGAAACCCAGCGTCGAGGTTGCACCCAATTGCCCTCGCTGCGCCTCCACCAACACCAAATTCTGTTACTACAACAACTACAGCTTGTCCCAGCCGAGGTACTTCTGCAAAGGCTGCAGGCGCTACTGGACCAAAGGCGGCTCTCTCCGCAACGTCCCCGTCGGCGGTGGCTGCCGCAAGAACCGCCGTGGAAAGTCATCGTCGTCGTCGCGGCTACAACACCAAAGCCATCAACGCGCTTTTAGCTGTGAGAACACAGAGTCATCATCAGTAGGTGATGATGCCCAACAAAATAACAATGTGTCACGTGATATAGACATGGCTCTCGTGTTCGCCAAATTCTTGAACCCAAAACCAACTACTGGTGAGGATAACAATGGTTCACCTTCTTCCAACAATTACTTAACACCGGAAAGTGTAGAAATTGAGAATGATGCAGTGGTTCAGTCACAGAATAAGGCTTCATCGGATCCTGTTATTGTAGAGTCTGAGAATTTGAGTTTGGTTGAGATTGATGAGTTGGAGAGGTTATTAGGTGTGTGTGGTGATGAAGATGGTCTTTGGTCTGATGCTACCTTGTCGTCTTCGGTTACTTGGGAACCACCATTGAAGGAGTCGGAATACTCGATGCCGTTGAATGAGGATGATGGTGATCAATTGTTACCCATCATCATTTCTGCATCTACGATGAGCGACACTTGCTGGAGTAATTGGAGTTCCTTTGATCTTTCAACCATGGACGCGCTCTCATCAAGTCCTTCTTAA 870 0.4839 MFPRSFNISGGDAGLPQMLHPRHMVTPMEEQQRSRWKPSVEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGKSSSSSRLQHQSHQRAFSCENTESSSVGDDAQQNNNVSRDIDMALVFAKFLNPKPTTGEDNNGSPSSNNYLTPESVEIENDAVVQSQNKASSDPVIVESENLSLVEIDELERLLGVCGDEDGLWSDATLSSSVTWEPPLKESEYSMPLNEDDGDQLLPIIISASTMSDTCWSNWSSFDLSTMDALSSSPS* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2006 289 MobiDBLite consensus disorder prediction 154 171 - -
Gso4g2006 289 MobiDBLite consensus disorder prediction 151 171 - -
Gso4g2006 289 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 246 IPR045174 GO:0003700|GO:0006355
Gso4g2006 289 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
Gso4g2006 289 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
Gso4g2006 289 MobiDBLite consensus disorder prediction 103 134 - -
Gso4g2006 289 PANTHER DOF ZINC FINGER PROTEIN DOF1.2 24 246 - -
Gso4g2006 289 MobiDBLite consensus disorder prediction 88 134 - -
Gso4g2006 289 Pfam Dof domain, zinc finger 44 98 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2006 Gso-Chr4 50415134 50416430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2006 36 228 C2C2-Dof Transcription Factor Family AT3G52440 42.273 1.56e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso4g2006 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2006 - - gmx:778117 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2006 4 50415134 50416430 Gso4g2006 4 50415134 50416430 ECH
Gso4g2006 4 50415134 50416430 Gso6g1050 6 10188282 10189815 GST