Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1953 ATGGACACGGCTCAGTGGGCACAGGGTATTGGAGTGGTTAAACAACCGATGGAAGGTTCAAAGCCTCCTCCTCCTCCTCCTCCTCCTATGTTGGAGAGAAGGGCAAGGCCTCAAAAGGATCAAGCTTTGAACTGCCCAAGGTGCAATTCAACAAACACCAAATTCTGCTACTACAACAACTATAGCCTCTCTCAGCCAAGGTACTTTTGCAAGACATGTAGAAGGTATTGGACTGAGGGTGGTTCTCTCAGAAATGTTCCTGTGGGTGGTGGCTCTAGAAAGAACAAGAGATCAACCCCGCCAGCACCACCATCAGCACCAGCACCAACAAAGAAGCTTTCTGATCTCGCAACACCAAATTTCCCTCAATCTGCTTCTCAGGACCCTAAGATCCACCAAGGCCAAGACCTTAACCTAGCATATCCACCAGCTGAGGACTACAGCACTGTCTCCAAGTTCATTGAGGTTCCTTACAGCACTGAATTAGACAAGGGTACTACTGGTCTTCATCAAAACCCTACTTCCTCATCAACAACAACATCTGCATCTTCTCAGTTGTCTGCCATGGAGCTTCTCAAGACTGGGATTGCAGCTGCTTCCTCAAGGGGTTTGAACTCCTTCATGCCAATGTATAATTCAACCCATGGGTTTCCCTTGCAGGACTTTAAGCCACCACATGGCCTTAACTTCAGCCTTGAGGGGTTTGAAAATGGTTATGGGGGTCTTCAGGGGATTCAAGAGGGTCCCACTGGTGGTGCAAGGATCTTGTTTCCTACTGTGGAGGATTTGAAGCAGCAAGTTCCAAGCACAAATGAGTTTGATCAGCAGAATAGAAGTCAAGAGGGTTCAGCTCACGGGTATTGGAATGGCATGTTAGGTGGAGGATCATGGTAG 894 0.4799 MDTAQWAQGIGVVKQPMEGSKPPPPPPPPMLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTPPAPPSAPAPTKKLSDLATPNFPQSASQDPKIHQGQDLNLAYPPAEDYSTVSKFIEVPYSTELDKGTTGLHQNPTSSSTTTSASSQLSAMELLKTGIAAASSRGLNSFMPMYNSTHGFPLQDFKPPHGLNFSLEGFENGYGGLQGIQEGPTGGARILFPTVEDLKQQVPSTNEFDQQNRSQEGSAHGYWNGMLGGGSW* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1953 297 Pfam Dof domain, zinc finger 40 97 IPR003851 GO:0003677|GO:0006355
Gso4g1953 297 MobiDBLite consensus disorder prediction 81 131 - -
Gso4g1953 297 MobiDBLite consensus disorder prediction 116 131 - -
Gso4g1953 297 MobiDBLite consensus disorder prediction 272 297 - -
Gso4g1953 297 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Gso4g1953 297 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 294 IPR045174 GO:0003700|GO:0006355
Gso4g1953 297 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Gso4g1953 297 MobiDBLite consensus disorder prediction 164 183 - -
Gso4g1953 297 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 294 - -
Gso4g1953 297 MobiDBLite consensus disorder prediction 18 32 - -
Gso4g1953 297 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1953 Gso-Chr4 49766128 49767914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1953 30 297 C2C2-Dof Transcription Factor Family AT3G61850 43.836 2.38e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso4g1953 zf-Dof 1.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1953 - - gmx:778114 589.341