Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1413 ATGCAGGAAAATAAGGATCCAGCAATTAAGCTCTTCGGCCAGAAGATTGCCTTCCCCGGAGAAGCCGATTCTCAAGCCATTGCCGGCGGCGAAACCGACTGGCCGCCGGCGATGGACGTCGACAAGGACGAAGAAGACTTTGGTATTGGTAACCCAGACAAAGATGAGAAAGACAAGGATCCTCGAGCTGAAAAAGTTAGTGAGAAAACGAAAGAAGCTGATCCTCCTCCAGATGCTGCAGACTCTAAGACGTCAGAGGGTATTCAGAACCCAAATACACCTTCCATAGACGAAGAATCTGCAAAGTCAAAAAACGACAAGTCAGAGAACGATCAACAAGAAAACAACAACAACAAAACACTGAAGAAGCCAGACAAAATTCTGCCGTGTCCGCGCTGCAACAGCATGGACACCAAGTTCTGCTACTACAACAACTACAACGTTAACCAACCCCGCTATTTCTGCAAGGCGTGCCAAAGGTACTGGACCGCTGGCGGCACCATGCGGAACGTGCCGGTGGGAGCGGGGCGAAGAAAGAACAAGAACTCAGCCTCGCACTACCGCCACATCACAATCTCTGAAGCTCTTCAAGCGGCCAGAATCGATGCCCCCAACGGAACTCATCTTTTGAAACAAAATGGGAGAGTCCTCAGCTTCGGATTAGACCCTCCAATTTGTGATTCCATGGCATCAATCCTTAACCTCACAGCAGAGAAAAAGGGTAGTCTTAACAACAACACAAGAAACGGATTTCACACAATTGAGGATCAGAGAAACAAAGACAACCACAACAATAACAATAACAACGGTGATGACTGCTCAAGTGCATCTTCAATTACTGTTTCCAATGAGGAAAGTGGGAAAAGCACGTCTCAAGAATCGATTATGGTGCCCAACAGCAACGGTTTCATCCACCATGTTCCATGCATTTCCACTCTCCCTTGGCCTTATCCTTTTCCCTCAGCAGCACCTGCTATGTGCCCTCCAGGGTTTCCCATGTCATTCTACCCTGCAGCATTTTGGAACATTCCATGGTTTCCCTCACAACACTCACACCATTCTGCTCCTACTCCAAGGTCTCCCAGTTCCGGTCCTAATTCTCCAACACTAGGGAAACACTCCCGCGACGACGACGCGGAAAAACAAGACCATTTGCAAGAAGAATCACCCTCCAGGCAGAGAAACGGGTCTGTTCTGGTCCCGAAAACATTGAGAATTGATGACCCAAGTGAGGCTGCAAAGAGTTCCATATGGGCAACTTTAGGGATCAAGAATGAGTGTGTCACTGGTGGTGGCATGTTCAAGGGATTCCAATCAAAGAAAGATGAGAAAGACCATGTTGTTGAAGCCTCTCCAGTGTTGAGGGCTAACCCTGCAGCCTTGTCTAGATCCCTTAACTTTCATGAGAACTCTTGA 1416 0.4802 MQENKDPAIKLFGQKIAFPGEADSQAIAGGETDWPPAMDVDKDEEDFGIGNPDKDEKDKDPRAEKVSEKTKEADPPPDAADSKTSEGIQNPNTPSIDEESAKSKNDKSENDQQENNNNKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAARIDAPNGTHLLKQNGRVLSFGLDPPICDSMASILNLTAEKKGSLNNNTRNGFHTIEDQRNKDNHNNNNNNGDDCSSASSITVSNEESGKSTSQESIMVPNSNGFIHHVPCISTLPWPYPFPSAAPAMCPPGFPMSFYPAAFWNIPWFPSQHSHHSAPTPRSPSSGPNSPTLGKHSRDDDAEKQDHLQEESPSRQRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNECVTGGGMFKGFQSKKDEKDHVVEASPVLRANPAALSRSLNFHENS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1413 471 MobiDBLite consensus disorder prediction 371 390 - -
Gso4g1413 471 MobiDBLite consensus disorder prediction 349 370 - -
Gso4g1413 471 Coils Coil 96 116 - -
Gso4g1413 471 MobiDBLite consensus disorder prediction 263 294 - -
Gso4g1413 471 MobiDBLite consensus disorder prediction 242 294 - -
Gso4g1413 471 PANTHER CYCLIC DOF FACTOR 2 1 470 IPR045174 GO:0003700|GO:0006355
Gso4g1413 471 MobiDBLite consensus disorder prediction 1 128 - -
Gso4g1413 471 ProSitePatterns Zinc finger Dof-type signature. 130 166 IPR003851 GO:0003677|GO:0006355
Gso4g1413 471 MobiDBLite consensus disorder prediction 99 121 - -
Gso4g1413 471 ProSiteProfiles Zinc finger Dof-type profile. 128 182 IPR003851 GO:0003677|GO:0006355
Gso4g1413 471 PANTHER CYCLIC DOF FACTOR 1 1 470 - -
Gso4g1413 471 MobiDBLite consensus disorder prediction 83 98 - -
Gso4g1413 471 Pfam Dof domain, zinc finger 125 182 IPR003851 GO:0003677|GO:0006355
Gso4g1413 471 MobiDBLite consensus disorder prediction 41 79 - -
Gso4g1413 471 MobiDBLite consensus disorder prediction 349 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1413 Gso-Chr4 41560369 41563605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1413 1 469 C2C2-Dof Transcription Factor Family AT3G47500 49.287 1.79e-127 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso4g1413 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1413 - - gsj:114409713 963.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1413 4 41560369 41563605 Gso6g1639 6 17408533 17411743 GST