Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1037 ATGAGTCAAATGACAAATGAGATTAACTACAATGTGCACTGCAATGATCAAACTGGGTCACAGTTAAATGATGAGGGCAATGGAGTAGGTATGGTTCTGAAGAAAGGGCCATGGACAGCTGCTGAAGATGTTCTTTTGGTGAACTATGTCCAGAAGCATGGAGAGGGGAACTGGAATGCTGTTCAGAAGTACTCAGGCCTGTCTCGTTGTGGAAAAAGTTGTAGACTGCGATGGGCCAATCACCTAAGGCCAAATTTAAAGAAAGGAGCATTTACCGCAGAAGAGGAACGGATGATTGCTGAACTCCACGCCAAAATGGGAAACAAATGGGCACGCATGGCGGCGCACTTGCATGGTCGTACAGATAACGAAATAAAAAATTACTGGAACACTCGGATGAAGAGGCGGCAACGGGCTGGCTTGCCACTTTATCCTCCCGAGGTACTTTTGCAAGCATTTCAAGAGAGAAAGCATGGCCAAGGTACTGGTGAAATTAGTAATGGTGATGGAGGGCATCATGATTTCTTGAAGAAAAACAATTATGAGATACATGATGCAATATTTGACAGTCTGAAGGAAAATCAAGGAATCTTACCTTTTTTGCCTGACCTTCCTGCTATTTCTGCTAATAGCTTTCTGCCAAATTGTCTTGGTTCTCCTCCATATTGTAATTTTTTGCCATCAACATTACCTAACCATGATCATTTTCAAGAGTCAACCATGTCTTTTATTGGTTCCAGTGAATTGAACAGCAATGAGTTTTATCCATTTGACCGTATTAAGGATAATAATTCTGATAAGATTTCAGAATCATTTGGATTGTATTCTCCCCTTGATCGTGGTGCCTCCTCACATGGCTCAATTTGTTACAGCCATTCACTATCGAATGGCAATTCCTCTACTTCTAAGCTGATTTCTGAGGCTGCAAAGTCAGAGCTCCCTTCACTCCAAATTCCAGAAACCGAATTTGGTTGTTGGGGTACCTCTCCCCCACCTCCATTGAATGAGTCTCTTGATGTTTTCATTCATTCTCCTCAACCACCTAATGCACTAGACTCAGGTTCTTCACCACTTAATAGTGGCTTGCTTGATGCATTACTTTATCAAGCAAATACTCTTGGTTGTTCAAAGAATAATTCTTCTGACAAGAGTTTAAATTCTTCAATTGCAACTCCTGGTGACAGAGCTGAGAGTTCTGCTTTGAACATGTATGAGACAGAATGGGAGGATTATGCTGACCCTTTATCTCCCTTTGGAGCAACTTCAATCCTGAATGAGCATCCTGTTGTTAGCACCAATGGAAACTCATGGGATGATTGGGAACTTTTTCAGACCTTTAGTGCAAATTCTGCAGGCAACAATGAGAGATTGCAGTCAGTTGACCAGGTTTGGGCCCCTAAGAGTGGAAATCAATCCATGTCTCTGTTGAATCTCACTCTGCCAGATGTCTTGATAACTTCAGATTGGCACGAACTGTATTCTGACCACGATAGCATGAACCAAGCTGTCATGACTGAAGCTAGTGATGATATCAGTGGACAGTAA 1545 0.4214 MSQMTNEINYNVHCNDQTGSQLNDEGNGVGMVLKKGPWTAAEDVLLVNYVQKHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEERMIAELHAKMGNKWARMAAHLHGRTDNEIKNYWNTRMKRRQRAGLPLYPPEVLLQAFQERKHGQGTGEISNGDGGHHDFLKKNNYEIHDAIFDSLKENQGILPFLPDLPAISANSFLPNCLGSPPYCNFLPSTLPNHDHFQESTMSFIGSSELNSNEFYPFDRIKDNNSDKISESFGLYSPLDRGASSHGSICYSHSLSNGNSSTSKLISEAAKSELPSLQIPETEFGCWGTSPPPPLNESLDVFIHSPQPPNALDSGSSPLNSGLLDALLYQANTLGCSKNNSSDKSLNSSIATPGDRAESSALNMYETEWEDYADPLSPFGATSILNEHPVVSTNGNSWDDWELFQTFSANSAGNNERLQSVDQVWAPKSGNQSMSLLNLTLPDVLITSDWHELYSDHDSMNQAVMTEASDDISGQ* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1037 514 SUPERFAMILY Homeodomain-like 33 129 IPR009057 -
Gso4g1037 514 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Gso4g1037 514 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Gso4g1037 514 Gene3D - 90 136 - -
Gso4g1037 514 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Gso4g1037 514 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 510 - -
Gso4g1037 514 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Gso4g1037 514 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 510 - -
Gso4g1037 514 Gene3D - 34 87 - -
Gso4g1037 514 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Gso4g1037 514 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Gso4g1037 514 SMART sant 87 135 IPR001005 -
Gso4g1037 514 SMART sant 34 84 IPR001005 -
Gso4g1037 514 CDD SANT 37 82 IPR001005 -
Gso4g1037 514 CDD SANT 90 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1037 Gso-Chr4 15802878 15808073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1037 30 511 MYB Transcription Factor Family AT5G06100 40.200 6.71e-104 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso4g1037 Myb_DNA-binding 5.7e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1037 4 15802878 15808073 Gso6g2575 6 47513920 47519136 GST
Gso4g1037 4 15802878 15808073 Gso15g1898 15 41633537 41638651 PCT
Gso4g1037 4 15802878 15808073 Gso11g2213 11 37793088 37798465 PCT
Gso15g1898 15 41633537 41638651 Gso4g1037 4 15802878 15808073 PCT
Gso11g2213 11 37793088 37798465 Gso4g1037 4 15802878 15808073 PCT