Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1034 ATGGAAGAAGGGTTAGGGCAAAACTCAGTTCCTCCTCATGGTCCCATTGATAAGTCCAAGATTCTGGATATTAAACCTCTGAGGAGTTTGATTCCTATTTACTCAATGTCTTCTCAAGCTCCACCTGCTGGCCAGTATCCTTCTGGGTTTTCTCCGTTTTTCCCATTTGGTGCACCTCAGCAAACTCCAACTGGGGTGACGACAAGGGGTGCTGCCACACCTGCTCCATTAAGGGCATATAAGAACCCACTAGGGGCAGGAGACTCTAGTTCAACAATGAACGGGTTCAATGGTCAAGATACTTCTGGGAAGAAAAAACGTGGATCACCGTCGCGCCACACCAAATCATCTGTAAATAAGCCTAAGAAAAGTCAAGAGCCACCTGCTGATTTAAGTGGCTTAGTTGGTATTAGCCCTGCCCAAAGAGAAGATGGTAGCCGTGAAGTGGTTAATATTGTGCTCATGGCGTATGATGCACTTCGGAGAAGGCTCTGCCAACTTGAAGAGGCGAAGGAATTGAGCTCAGGTTCGATCAAGCGTGCAGATTTGAAAGCTTGCAATACTTTGATGACCAGAGGAATTCGGACAAACATGAGGAAGAGAATAGGAGCAGTTCCTGGGATTGAGATTGGTGACATTTTTTATTTCCGAATGGAATTGTGTATTGTGGGCTTGCATGCTCCCTCCATGGGTGGAATTGATGCCTTGCATATCAGGGGTGAGTTTGAGGAGGAAACTCTGGCTGTGTGCATTGTTTCGTCAGGAGAATATGACGATGATGCTGAGGATAGTGATGTTATAATTTATACTGGTCAGGGTGGGAACTTCTTCATGAATAAAGATAAGCACACAACTGACCAGAAGCTTCAAAGGGGTAATCTTGCTTTGGATAGGAGTTCGCGACAACACAATGAAGTAAGAGTCATCCGGGGCATGAGAGATGGTGTGAATCCAAATAATAAAATCTATGTCTATGATGGTCTTTATAAAATCCAAGATTCATGGATAGAAAAAGCAAAAGGTGGCGGTGGTGTATTTAAGTATAAGTTGGTGAGAATACCTGGTCAATCTAGTGCCTTTGCTGTTTGGAAATCAATTCAGAAGTGGAAATCTGGCTCCCCTTCAAGGACTGGACTTATTCTTGCAGACCTTTCCAATGGAGCTGAGGGTATTCCTGTCTCACTTGTCAATGAGGTCAATAATGTGAAGGCACCTACTTTTTTCAATTATTTCCATTCTCTTAGACATCCAAAATCATTCAGTTTAATGCAGCCTTCACATGGGTGCACCTGCATTAAAGCATGTGTCCCAGGTGATTTGAACTGCTCTTGCATTAGGAGAAATGAAGGTGATTTCCCATACACTGGCAATGGCATTCTCGTGAGCCGGAAGCCATTGGTTCATGAATGTGGCCCCACATGTCAGTGTTTTCCTAACTGCAAAAATCGAGTGTCGCAAACTGGTTTAAAGCACCCCATGGAAGTGTTCAGAACGAAGGATAGAGGGTGGGGTCTTCGATCGCTGGATCCTATTCGTGCTGGTACTTTTATTTGTGAATATGCAGGAGAAGTTGTTGACAGAGGCAAGGTAAGTCAGCTTGTGAAGGAAGGAGATGAGTATGTTTTTGATACAACCCGTATTTATGATCAATTCAAGTGGAATTATGAGCCTAGGCTTTTGGAAGAAATCGGTTCCAATGACTCTACTGAGGATTATGCCATGCCGTATCCTTTAATTATAACTGCCAAGAATATTGGGAATGTAGCTAGATTCATGAACCATAGTTGCTCCCCAAATGTTTTCTGGCAGCCTGTCGTGTATGAAGAGAACAACCAATCATACCTCCATGTTGCATTTTTTGCACTCAGACACATTCCGCCAATGACTGAGTTAACATATGATTATGGACTTGCCCAATCTGATCATGCCGAAGGTAGCAGTGCAGCCAAAGGGAGAAAGAAATGCTTATGCGGATCATCAAAATGCCGTGGTTCTTTTGGTTAG 2004 0.4366 MEEGLGQNSVPPHGPIDKSKILDIKPLRSLIPIYSMSSQAPPAGQYPSGFSPFFPFGAPQQTPTGVTTRGAATPAPLRAYKNPLGAGDSSSTMNGFNGQDTSGKKKRGSPSRHTKSSVNKPKKSQEPPADLSGLVGISPAQREDGSREVVNIVLMAYDALRRRLCQLEEAKELSSGSIKRADLKACNTLMTRGIRTNMRKRIGAVPGIEIGDIFYFRMELCIVGLHAPSMGGIDALHIRGEFEEETLAVCIVSSGEYDDDAEDSDVIIYTGQGGNFFMNKDKHTTDQKLQRGNLALDRSSRQHNEVRVIRGMRDGVNPNNKIYVYDGLYKIQDSWIEKAKGGGGVFKYKLVRIPGQSSAFAVWKSIQKWKSGSPSRTGLILADLSNGAEGIPVSLVNEVNNVKAPTFFNYFHSLRHPKSFSLMQPSHGCTCIKACVPGDLNCSCIRRNEGDFPYTGNGILVSRKPLVHECGPTCQCFPNCKNRVSQTGLKHPMEVFRTKDRGWGLRSLDPIRAGTFICEYAGEVVDRGKVSQLVKEGDEYVFDTTRIYDQFKWNYEPRLLEEIGSNDSTEDYAMPYPLIITAKNIGNVARFMNHSCSPNVFWQPVVYEENNQSYLHVAFFALRHIPPMTELTYDYGLAQSDHAEGSSAAKGRKKCLCGSSKCRGSFG* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1034 667 SMART set_7 491 642 IPR001214 GO:0005515
Gso4g1034 667 MobiDBLite consensus disorder prediction 51 140 - -
Gso4g1034 667 SUPERFAMILY PUA domain-like 185 373 IPR015947 -
Gso4g1034 667 ProSiteProfiles Post-SET domain profile. 651 667 IPR003616 -
Gso4g1034 667 MobiDBLite consensus disorder prediction 85 104 - -
Gso4g1034 667 Pfam SET domain 502 636 IPR001214 GO:0005515
Gso4g1034 667 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 665 - -
Gso4g1034 667 SUPERFAMILY SET domain 391 664 IPR046341 -
Gso4g1034 667 ProSiteProfiles Pre-SET domain profile. 427 488 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso4g1034 667 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 14 665 - -
Gso4g1034 667 ProSiteProfiles SET domain profile. 491 636 IPR001214 GO:0005515
Gso4g1034 667 Pfam Pre-SET motif 385 483 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso4g1034 667 Gene3D SET domain 373 666 IPR046341 -
Gso4g1034 667 Pfam SAD/SRA domain 202 356 IPR003105 -
Gso4g1034 667 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 62 667 IPR025794 GO:0016571
Gso4g1034 667 SMART G9a_1 198 356 IPR003105 -
Gso4g1034 667 MobiDBLite consensus disorder prediction 55 69 - -
Gso4g1034 667 ProSiteProfiles YDG domain profile. 203 352 IPR003105 -
Gso4g1034 667 SMART preset_2 381 475 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso4g1034 667 Gene3D - 185 371 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1034 Gso-Chr4 15578441 15582831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1034 17 667 Su(var)3-9 homologs AT5G04940 52.339 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso4g1034 SAD_SRA 5.4e-48 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1034 4 15578441 15582831 Gso15g1889 15 41137452 41149177 PCT
Gso4g1034 4 15578441 15582831 Gso11g2208 11 37719984 37726336 PCT
Gso15g1889 15 41137452 41149177 Gso4g1034 4 15578441 15582831 PCT
Gso11g2208 11 37719984 37726336 Gso4g1034 4 15578441 15582831 PCT