LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso4g1031	ATGGAAGAGGAGACATTTGAAAAACCATTGTTGAAGAAAAACTATCATGAGAATTGTCCTGGTTGTAAGGTGGATCAAGCCAAGGAGCTCAAAAAGGATGTTTCCTTTAGAAATCTTTCTTATATATGGCTGGCGGTGTTATGTGGCACTTTGCCTGTAGCATCACTCTTTCCCTTTGTTTACTTCATGGTGAAGGATTTTAATATTGCTGAAACAGAGGAAGACATAAGTACCTATGCTGGATATGTGGGATCATCAATGATGCTTGGCAGGTCTTTGACATCCATATTGTGGGGTATGATTTCAGATCGCTATGGTAGAAAACCTGTTATCATTATAGGGATTATCACTGTTGTCATTTTCAACACATTATTTGGTCTTAGCACGAATCTTTGGATGGCTGTTAGCATGCGATTTCTTCTTGGATGTTTAAATGGTTTACTTGGACCAATAAAGGCTTATGCTACTGAAATTTTCAGAGAAGAGGAGCAGGCTCTTGGACTCTCAACAGTGGTTGCTGCTTGGGGAGTAGGTTTAGTCATTGGTCCAGCATTGGGAGGTTATTTGGCTCAGCCGGTGTTGAAATACCCACATATATTTCCAAAGGGTTCCTTTTGGGATAGGTTTCCATATTTCTTGCCGTGCTTTATAATATCAGCTTTTGCGTTTGCATCAGCAATTGCTTGCATTTGGCTTCCAGAGACTCTTCACAACCACAAAGATAGCATTGAGTCCACTAAAAATGTTGAAGCTTTGGAAGTTGGAAGCAGTGAGGCAGACAAAGACAGAATGATCCAAAGAGATAAAAGCATCTTCCGAAATTGGCCCTTAATGTCATCTATCATTGTTTACTGTATTTTTTCACTACATGATGTTGCTTACCAGGAGGTTTTCTCATTGTGGGCTTTGAGTCCTTTAAGGTTGGGTGGTCTGAACTTTACAACTGATAATGTTGGTAATGTTCTTGCAATATCAGGTGTTGCTATTCTAATCTTCCAGCTTACACTGTACCGATCAGTTCAAAAAGCTTGTGGACCCATTAATCTAGTTCGCATAACAGGGGTGTTATCCATACCTCTCTTGCAATGTTTTCCCTTCATGACAATGTTGTCAGGCTTCACACTGGACATAGTGATCAATATTGCCTCCATTCTGAAGAATCTTATGATTGTAAGTGAGACAATTGCAACTAGTTTATTCCTTCTGCAAAATAAAGCTGTGAAACAACATCAAAGGGGAACAGCTAATAGTATCGCTATGACGGGTATGTCAATATTCAAAACAATTGGTCCTGCTAGTGCCGGTGCATTATTATCTTGGTCACAAAAGCATATAAATGATTTTTTCCTGCCAGGCACCCATATTGTCTTCCTTGCCCTGAATATTGTTGAAGGACTTGGAGTACTATTAATGTTCAAACCATTCTTGAGTGTAAAGAATTAA	1443	0.3929	MEEETFEKPLLKKNYHENCPGCKVDQAKELKKDVSFRNLSYIWLAVLCGTLPVASLFPFVYFMVKDFNIAETEEDISTYAGYVGSSMMLGRSLTSILWGMISDRYGRKPVIIIGIITVVIFNTLFGLSTNLWMAVSMRFLLGCLNGLLGPIKAYATEIFREEEQALGLSTVVAAWGVGLVIGPALGGYLAQPVLKYPHIFPKGSFWDRFPYFLPCFIISAFAFASAIACIWLPETLHNHKDSIESTKNVEALEVGSSEADKDRMIQRDKSIFRNWPLMSSIIVYCIFSLHDVAYQEVFSLWALSPLRLGGLNFTTDNVGNVLAISGVAILIFQLTLYRSVQKACGPINLVRITGVLSIPLLQCFPFMTMLSGFTLDIVINIASILKNLMIVSETIATSLFLLQNKAVKQHQRGTANSIAMTGMSIFKTIGPASAGALLSWSQKHINDFFLPGTHIVFLALNIVEGLGVLLMFKPFLSVKN*	481

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso4g1031	480	PRINTS	Tetracycline resistance protein signature	111	135	IPR001958	GO:0022857
	Gso4g1031	480	PRINTS	Tetracycline resistance protein signature	168	190	IPR001958	GO:0022857
	Gso4g1031	480	PRINTS	Tetracycline resistance protein signature	342	362	IPR001958	GO:0022857
	Gso4g1031	480	SUPERFAMILY	MFS general substrate transporter	37	472	IPR036259	-
	Gso4g1031	480	ProSiteProfiles	Major facilitator superfamily (MFS) profile.	38	479	IPR020846	GO:0022857
	Gso4g1031	480	Gene3D	MFS general substrate transporter like domains	35	464	IPR036259	-
	Gso4g1031	480	PANTHER	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10	1	480	-	-
	Gso4g1031	480	Pfam	Major Facilitator Superfamily	42	431	IPR011701	GO:0022857\|GO:0055085
	Gso4g1031	480	CDD	MFS_SLC46_TetA_like	42	473	-	-
	Gso4g1031	480	PANTHER	ZINC INDUCED FACILITATOR-LIKE PROTEIN	1	480	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso4g1031	Gso-Chr4	15422361	15446879	Dispersed/Wgd

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso4g1031	4	15422361	15446879	Gso6g2580	6	47559708	47571078	GST
	Gso4g1031	4	15422361	15446879	Gso11g2204	11	37672099	37678724	PCT
	Gso11g2204	11	37672099	37678724	Gso4g1031	4	15422361	15446879	PCT