Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1025 ATGGATATAGATCTTCGGTTACCTTCTGGTGAACATGATAAGGAGGATGAAGAAACAACTACAATTGATAACATGTTGGACAGTGAAGAAAAATTGCATAATGGAGGTATAGATGGCAGAAATATAGTTGATACTGGAATTGAGGTACATGCTCTAAATGGTGGAGATTTGAATTCACCCACAGTTGATATTGTAATGTTTAAGGAAGATACAAATCTTGAGCCACTTTCTGGCATGGAATTTGAGTCTCACGGGGAAGCTTATTCTTTTTACCAAGAATATGCTCGGTCGATGGGATTCAACACTGCAATACAAAATAGTCGTCGTTCAAAAACATCAAGAGAATTTATAGATGCGAAGTTTGCTTGTTCTCGATATGGAACAAAACGAGAGTATGACAAATCATTTAATCGACCACGTGCACGACAGAACAAGCAAGATTCTGAAAATTCAACTGGTCGAAGATCTTGTTCAAAGACTGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGTCAGATGGAAAATGGGTTATACATAGCTTTGTGAAGGAGCATAATCATGAGCTTTTACCAGCCCAAGCAGTTAGTGAACAAACAAGACGAATGTATGCTGCGATGGCTAGGCAGTTTGCCGAATACAAAACCGTGGTTGGTCTCAAGAATGAGAAGAATCCATTTGATAAAGGTCGGAATTTGGGCCTGGAGTCAGGGGAGGCTAGACTCATGCTTGATTTTTTCATACAGATGCAAAATATGAATTCTAACTTCTTTTATGCAGTAGATCTTGGTGAAGATCAACGTCTGAAAAATCTTTTATGGATTGACGCTAAAAGTAGGAATGACTATATCAACTTTTGTGATGTAGTGTCGTTTGATACCGCCTATGTTAGAAACAAATATAAGATGCCGCTTGCACTTTTTGTTGGAGTGAACCAGCACTACCAATTTACATTACTTGGATGTGCCCTGATATCAGATGAAAGTGCTGCCACTTTTTCTTGGCTATTTCGGACGTGGCTGAAAGGAGTTGGTGGTCAAATTCCAAAAGTGATCATTACTGACCATGACAAGACATTGAAGTCAGTTATTTCAGATATCTTTCCTAATTCCAGTCATTGTGTTTGCCTATGGCATATATTAGGGAAGGTATCTGAAAATTTATCTCCTGTAATTAAAAAGCATGAGAATTTTATGGCAAAATTTGAAAAATGCATTTATAGGTCCTTGACCAGTGATGATTTTGAGAAGAGATGGTGGAAAATTGTTGATAAGTTTGAACTTCGAGAGGATGAATGCATGCAGTCATTGTATGAAGATCGTAAGTTATGGGCACCAACATTCATGAAAGATGTTTTCTTAGGTGGTATGTCTACTGTCCAGCGATCTGAAAGTGTAAATTCCTTCTTTGACAAATATGTTCATAAGAAGACCTCTGTCCAAGATTTTGTCAAACAGTATGAAGCAATCTTGCAAGACAGGTATGAAGAGGAAGCAAAAGCAGATTCTGATACATGGAATAAAGTGGCAACCTTAAAAACTCCTTCTCCATTGGAGAAGAGTGTTGCAGGGATTTTCTCGCATGCTGTATTCAAGAAGATTCAAACTGAGGTTGTAGGTGCAGTTGCTTGCCATCCTAAAGCTGACAGGCAGGATGATACAACCATTGTTCACAGGGTTCATGATATGGAAACAAATAAAGACTTCTTTGTTGTGGTGAATCAAGTTAAATCTGAGTTGTCCTGTATATGTCGGTTATTTGAATATAGAGGCTATCTTTGTAGACATGCGTTGTTTGTTCTTCAATATTCTGGCCAGTCAGTGTTCCCATCTCAATATATTTTGAAACGGTGGACAAAAGATGCAAAGGTCAGGAATATAATGGGAGAAGAATCGGAACACATGCTAACTAGGGTGCAACGTTACAATGATTTATGTCAGCGAGCACTAAAACTTAGTGAAGAGGGATCATTGTCTCAAGAGAGTTATGGTATTGCATTCCATGCGCTACATGAAGCTCACAAAAGTTGTGTGAGTGTTAACAATTCTAGTAAGAGTAGTCCTACAGAAGCTGGCACACCAGGGGCTCATGGTCAGCTTTCCACTGAAGAAGATACCCAAAGTAGAAATATGGGCAAGTCAAACAAAAAGAAGCATCCAACTAAAAAGAAAAAGGTGAACTCTGAAGCAGAAGTGATAACAGTTGGGGCATTAGACAACTTGCAACAAATGGACAAATTCAGCACAAGAGCAGTAACCCTTGAAGGTTATTATGGCACACAGCAGAGCGTGCAAGGGATGTTGAACTTGATGGGACCAACACGTGATGATTACTACGGGAATCAACAGACACTTCAGGGGCTGGGACCAATAAGTTCAATACCAACCAGTCACGATGGTTATTATGGTACACATCAGGGCATGCCGGGTCTGGCACAACTAGATTTTTTGCGAACTGGTTTCACATATGGCATTCGGGATGATCCTAACGTGAGAGCAACACAGTTGCATGAGGATCCATCTAGACATGCATGA 2532 0.3945 MDIDLRLPSGEHDKEDEETTTIDNMLDSEEKLHNGGIDGRNIVDTGIEVHALNGGDLNSPTVDIVMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQDSENSTGRRSCSKTDCKASMHVKRRSDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKTVVGLKNEKNPFDKGRNLGLESGEARLMLDFFIQMQNMNSNFFYAVDLGEDQRLKNLLWIDAKSRNDYINFCDVVSFDTAYVRNKYKMPLALFVGVNQHYQFTLLGCALISDESAATFSWLFRTWLKGVGGQIPKVIITDHDKTLKSVISDIFPNSSHCVCLWHILGKVSENLSPVIKKHENFMAKFEKCIYRSLTSDDFEKRWWKIVDKFELREDECMQSLYEDRKLWAPTFMKDVFLGGMSTVQRSESVNSFFDKYVHKKTSVQDFVKQYEAILQDRYEEEAKADSDTWNKVATLKTPSPLEKSVAGIFSHAVFKKIQTEVVGAVACHPKADRQDDTTIVHRVHDMETNKDFFVVVNQVKSELSCICRLFEYRGYLCRHALFVLQYSGQSVFPSQYILKRWTKDAKVRNIMGEESEHMLTRVQRYNDLCQRALKLSEEGSLSQESYGIAFHALHEAHKSCVSVNNSSKSSPTEAGTPGAHGQLSTEEDTQSRNMGKSNKKKHPTKKKKVNSEAEVITVGALDNLQQMDKFSTRAVTLEGYYGTQQSVQGMLNLMGPTRDDYYGNQQTLQGLGPISSIPTSHDGYYGTHQGMPGLAQLDFLRTGFTYGIRDDPNVRATQLHEDPSRHA* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1025 843 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 47 782 - -
Gso4g1025 843 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 47 782 IPR031052 GO:0006355
Gso4g1025 843 ProSiteProfiles Zinc finger SWIM-type profile. 568 604 IPR007527 GO:0008270
Gso4g1025 843 MobiDBLite consensus disorder prediction 132 164 - -
Gso4g1025 843 MobiDBLite consensus disorder prediction 678 707 - -
Gso4g1025 843 SMART 26again6 579 606 IPR006564 GO:0008270
Gso4g1025 843 MobiDBLite consensus disorder prediction 678 727 - -
Gso4g1025 843 Pfam SWIM zinc finger 576 602 IPR007527 GO:0008270
Gso4g1025 843 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
Gso4g1025 843 Pfam MULE transposase domain 288 380 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1025 Gso-Chr4 15127034 15133985 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gso4g1025 FAR1 2.3e-27 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1025 4 15127034 15133985 Gso6g2589 6 47673946 47680108 GST
Gso4g1025 4 15127034 15133985 Gso8g1894 8 18603064 18611355 PCT
Gso8g1894 8 18603064 18611355 Gso4g1025 4 15127034 15133985 PCT