Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0390 ATGGCTCTGGAAGCTCTTCAATCACCCAGAACAGCCACTCCATCGTTTAGTCCCTTTGAAGAAACCAACCTCAGTTACTTGGAGACACCGTGGACCAAAGGAAAGCGTTCTAAGCGTAGCCGCATGGAGCAGCAACTGCAACACTCTTCATGCACCGAGGAAGAGTACCTCGCTCTCTGTCTCATCATGCTCGCTCACGGCGGCGCCGGCGGTGTCCCCGCCTCCAAGCCTGCTGTCTCCGACAACAATTCCGCGCCGCTACCCGCCGCCAAACTGAGCTACAAATGTTCGGTCTGCAACAAAGCCTTCTCCTCTTACCAAGCACTCGGTGGACACAAGGCCAGCCACCGGAAGCTCGGCGGCGAGCACCACTCGACCTCCTCCGCCGTGACAACGAGTTCGGCGTCGAACGGCGGTGCTAGGACCCACGAGTGCTCCATCTGCCAAAAGACGTTCCCAACAGGACAGGCCTTGGGAGGACACAAACGTTGTCACTACGAAGGCGGTAACAGCGCCGTAACCGCCTCTGAGGGAGTGGGGTCCACTCACACAGGAAGCCACCGCGATTTCGATCTGAACCTCCCGGCTTTTCCGGACTTTTCAACAAGGTTCTTCGTTGATGACGAGGTTACCAGTCCTCATCCATCCAAGAAATCCCGTCTCAATTTGACCATACCCAAGATTGAAATCCCTCAATACTGA 702 0.5613 MALEALQSPRTATPSFSPFEETNLSYLETPWTKGKRSKRSRMEQQLQHSSCTEEEYLALCLIMLAHGGAGGVPASKPAVSDNNSAPLPAAKLSYKCSVCNKAFSSYQALGGHKASHRKLGGEHHSTSSAVTTSSASNGGARTHECSICQKTFPTGQALGGHKRCHYEGGNSAVTASEGVGSTHTGSHRDFDLNLPAFPDFSTRFFVDDEVTSPHPSKKSRLNLTIPKIEIPQY* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0390 233 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Gso4g0390 233 MobiDBLite consensus disorder prediction 114 140 - -
Gso4g0390 233 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Gso4g0390 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 116 IPR013087 -
Gso4g0390 233 MobiDBLite consensus disorder prediction 124 140 - -
Gso4g0390 233 PANTHER ZINC FINGER PROTEIN ZAT10 1 224 - -
Gso4g0390 233 Pfam C2H2-type zinc finger 143 166 - -
Gso4g0390 233 Pfam C2H2-type zinc finger 94 118 - -
Gso4g0390 233 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 224 IPR044653 GO:0003700
Gso4g0390 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 165 IPR013087 -
Gso4g0390 233 SUPERFAMILY beta-beta-alpha zinc fingers 94 165 IPR036236 -
Gso4g0390 233 SMART c2h2final6 143 165 IPR013087 -
Gso4g0390 233 SMART c2h2final6 94 116 IPR013087 -
Gso4g0390 233 Gene3D Classic Zinc Finger 92 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0390 Gso-Chr4 3560776 3561821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0390 1 225 C2H2 Transcription Factor Family AT1G27730 54.167 5.41e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso4g0390 zf-C2H2_6 5.2e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0390 4 3560776 3561821 Gso4g0390 4 3560776 3561821 ECH
Gso4g0390 4 3560776 3561821 Gso6g0367 6 3449171 3450306 GST
Gso14g0757 14 7920795 7921815 Gso4g0390 4 3560776 3561821 PCT
Gso17g2010 17 39463712 39464829 Gso4g0390 4 3560776 3561821 PCT
Gso4g0390 4 3560776 3561821 Gso14g0757 14 7920795 7921815 PCT
Gso4g0390 4 3560776 3561821 Gso17g2010 17 39463712 39464829 PCT