Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0380 ATGGAGTCACGCGCCGCAAAGAGAAGGGCCAACCAACCCCAAAACGAACCCCTCACAAAACGACGCGTCGTGTTGGGTGAACTTTCCAACTTGCCCAATCTCATCGTTCCTCAACCAGCGGTCACTGACAAGACCCTCACTGTTCACAACGGTGTTTCTGCAGAATCAAACGTTAATGCTCCTATTGTTTCCGACATCTATAACTATCTTCGTACAATCGAGATGGAGAAGCGAAGGCCAATGGTTGATTACATTGAGAATGTTCAGAAAGAGGTTACAACGATCATGAGAGCAATATTGGTGGATTGGATAGTAGAGGTTGCCGAAGAATACAAGCTTCTCTCTGATACCATTTTTCTCTCTGTTTCATATATCGATAGAGTTTTGTCTATTAATCCTGTCAGCAAGCCGAGGCTACAGTTACTGGGTATTTCTTCCATGTTCATTGCATCTAAGTATGAGGAAATTAGCCCGCCGCATGTGGAAGAATTCTGCTTTATCACTGACAACACGTATGACAAGGCAGAGGTGGTGAGTATGGAGGCTGACATACTTAAGGCCCTGAATTTTGAATTGGGCAACCCCACTGTTAAGACCTTTTTAAGGAGGTTTACTGGAATTGCCTGTGAGAATAAAAAGGCTTCAAGTTTGCAATTTGAGTTTATGAGTTATTATCTTGCTGAGCTAAGTTTGTTGGAGTATTGTTGTTTGAAGTTCTTACCTTCTTTGGTGGCTGCATCTGTTGTATTTCTTGCCAGGTTTATCATTTGGCCTGATCTGCAACCTTGGCAGACTTCAGACTTGTATGAATGCTCTCGGTATAAATCAGTTGAGTTAAAGGAGTGTGTTCTGGTCTTACATGACTTGTACACGGCAAGGAGGGGAGGGTCTTTCCAAGCTATTCGGGAGAAATACAAACAGCATAAGTTTAAGTACGTAGCAAACCTGTCTGCGCCCCAAGTACCTAATTATCTATTTGAAGAATGA 987 0.4286 MESRAAKRRANQPQNEPLTKRRVVLGELSNLPNLIVPQPAVTDKTLTVHNGVSAESNVNAPIVSDIYNYLRTIEMEKRRPMVDYIENVQKEVTTIMRAILVDWIVEVAEEYKLLSDTIFLSVSYIDRVLSINPVSKPRLQLLGISSMFIASKYEEISPPHVEEFCFITDNTYDKAEVVSMEADILKALNFELGNPTVKTFLRRFTGIACENKKASSLQFEFMSYYLAELSLLEYCCLKFLPSLVAASVVFLARFIIWPDLQPWQTSDLYECSRYKSVELKECVLVLHDLYTARRGGSFQAIREKYKQHKFKYVANLSAPQVPNYLFEE* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0380 328 Gene3D - 65 315 - -
Gso4g0380 328 ProSitePatterns Cyclins signature. 97 128 IPR006671 -
Gso4g0380 328 SMART Cyclin_C_2 195 319 IPR004367 -
Gso4g0380 328 CDD CYCLIN 96 185 IPR013763 -
Gso4g0380 328 Pfam Cyclin, N-terminal domain 65 192 IPR006671 -
Gso4g0380 328 PANTHER CYCLINS 47 327 IPR039361 -
Gso4g0380 328 SMART cyclin_7 102 186 IPR013763 -
Gso4g0380 328 SMART cyclin_7 199 288 IPR013763 -
Gso4g0380 328 PIRSF Cyclin_A_B_D_E 2 325 IPR039361 -
Gso4g0380 328 Pfam Cyclin, C-terminal domain 195 318 IPR004367 -
Gso4g0380 328 SUPERFAMILY Cyclin-like 60 192 IPR036915 -
Gso4g0380 328 SUPERFAMILY Cyclin-like 195 319 IPR036915 -
Gso4g0380 328 CDD CYCLIN 195 287 IPR013763 -
Gso4g0380 328 Gene3D - 80 193 - -
Gso4g0380 328 PANTHER CYCLIN-A3-1-RELATED 47 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0380 Gso-Chr4 3474505 3477495 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0380 1 328 Core Cell Cycle Gene Families AT5G43080 54.360 3.50e-123 355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0380 4 3474505 3477495 Gso6g0355 6 3339440 3341711 GST
Gso14g0746 14 7785777 7789491 Gso4g0380 4 3474505 3477495 PCT
Gso4g0380 4 3474505 3477495 Gso14g0746 14 7785777 7789491 PCT