Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0378 ATGCAGACTCGGGCTGCTGCAAAGAGAAAGGCAATCGCTGACACCGTAGTAGTCACGGTTGAGAAACAACACCCCAAAAAGCAAAGGGTTGTGTTGGGTGAACTTACCAATATTCCAAACCTTATTCTCCCCGAAACTCAATGTCCGCGCAAAGAGAAACTCCAATGTCGGAAGAATCCCAATGTCAAGAAACCATCTCCCACAAACAACACCCTTTCTTCCCCCCACATTGATGAACCTTATGTTTCCGACATCAACGACTATCTTTGTGCAATGGAGATGCAGAGAAAGAGAAGACCAATGTTTAACTACATGGACAGAGTTCAGCACGTGGTTACTGAAAACATGAGAGGAATATTGGTGGATTGGTTAGTGGAAGTTGCTGTGGAGTACAAGCTTCTCTCAGAAACCCTTCATCTATCTGTGTCATACATTGATAGGTTTTTGTCTATTAATCCTATGGGCAAATCGAGGCTTCAGTTGCTCGGTGTTTCTTCCATGCTCATTGCTTCGAAGTATGAGGAAGTTAATCCACCCCGTGTTGACAAATTCTGCAGCATTACGGATAACACTTATAAAAAGGCAGAGGTTGTAGAGATGGAAGCTAAAATACTTGCGGCCCTAAATTTTGAAATTGGAAATCCTACTGCAATCACTTTTCTAAGGAGGTTTTTGGGTGTTGCTTCTGAGAACCAAAAAAGCCCAAATTTGAAGATTGAATTTCTGAGCTTCTATCTTGCTGAGCTAAGTTTGATGGATTATGATTGTATAAGATTCTTGCCTTCTACCGTGGCTGCGTCAGTTATATTTCTGGCCAGGTTTATTATCTCGCCTGAAGTGCATCCTTGGACATCTTCCCTGTGTGAATGCTCGGGTTACAAACCTATTGAGTTGAAAGAATGTGTCCTCATCTTGCATGACTTGTATTTTTCAAGAAAGGCTGAGTCCTTCAAAGCTGTTCGGGAGAAATACAAGCAACCCAAGTTCAAATACGTGGCAAACCTGCCTTCCCCTCCATTTGTACCAAGTTATTACTTTGAAGATCAGTGA 1050 0.4229 MQTRAAAKRKAIADTVVVTVEKQHPKKQRVVLGELTNIPNLILPETQCPRKEKLQCRKNPNVKKPSPTNNTLSSPHIDEPYVSDINDYLCAMEMQRKRRPMFNYMDRVQHVVTENMRGILVDWLVEVAVEYKLLSETLHLSVSYIDRFLSINPMGKSRLQLLGVSSMLIASKYEEVNPPRVDKFCSITDNTYKKAEVVEMEAKILAALNFEIGNPTAITFLRRFLGVASENQKSPNLKIEFLSFYLAELSLMDYDCIRFLPSTVAASVIFLARFIISPEVHPWTSSLCECSGYKPIELKECVLILHDLYFSRKAESFKAVREKYKQPKFKYVANLPSPPFVPSYYFEDQ* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0378 349 SMART cyclin_7 219 307 IPR013763 -
Gso4g0378 349 SMART cyclin_7 122 206 IPR013763 -
Gso4g0378 349 Pfam Cyclin, N-terminal domain 86 212 IPR006671 -
Gso4g0378 349 CDD CYCLIN 116 205 IPR013763 -
Gso4g0378 349 MobiDBLite consensus disorder prediction 52 76 - -
Gso4g0378 349 MobiDBLite consensus disorder prediction 61 76 - -
Gso4g0378 349 SUPERFAMILY Cyclin-like 74 212 IPR036915 -
Gso4g0378 349 CDD CYCLIN 215 306 IPR013763 -
Gso4g0378 349 Pfam Cyclin, C-terminal domain 215 337 IPR004367 -
Gso4g0378 349 PANTHER CYCLINS 20 348 IPR039361 -
Gso4g0378 349 SUPERFAMILY Cyclin-like 215 339 IPR036915 -
Gso4g0378 349 Gene3D - 84 334 - -
Gso4g0378 349 Gene3D - 98 213 - -
Gso4g0378 349 PANTHER CYCLIN-A3-1-RELATED 20 348 - -
Gso4g0378 349 ProSitePatterns Cyclins signature. 117 148 IPR006671 -
Gso4g0378 349 SMART Cyclin_C_2 215 338 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0378 Gso-Chr4 3465666 3468030 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0378 3 348 Core Cell Cycle Gene Families AT5G43080 54.755 5.30e-125 361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0378 4 3465666 3468030 Gso4g0378 4 3465666 3468030 ECH
Gso17g2020 17 39610957 39614747 Gso4g0378 4 3465666 3468030 PCT
Gso4g0378 4 3465666 3468030 Gso17g2020 17 39610957 39614747 PCT