Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0369 ATGGCTTCGGCAAAGGACATGGATCGGATAAAAGGGCCATGGAGTCCTGAAGAGGACGAAGCGTTACGGAGGTTGGTTCAGACTTACGGCCCTAGGAACTGGTCCGTTATAAGCAAATCCATTCCGGGTCGGTCTGGGAAATCGTGCCGCTTGCGGTGGTGCAACCAGCTGTCTCCGGAGGTGGAGCGCCGGCCTTTCACGGCGGAGGAAGACGAGGCGATCCTGAAGGCTCACGCCAGGTTCGGGAACAAGTGGGCCACCATCGCGCGCTTCCTCAATGGCCGCACCGACAACGCCATCAAGAACCATTGGAATTCCACCCTCAAGAGGAAGTGCTCCGAGCCTCTCTCCGAGCCTCGGCCTCTGAAGAGATCCGCCACCGTTTCGGGTAGTCAATCCGGATCCGATTTGAGCGATTCGGGTTTACCCATTATTCTTGCAAGAAGCGTGAGCGTGACGGTTGCTCCCTCTAACCACCTTGCGGAAACCGCGTCTTCTTCAGTAACTGATCCTGCCACGTTATTGAGTTTGTCTCTACCGGGATTCGATTCGTGCGATGGGGCTAATAATGGGCCTGGGCCGAATCAGGGGCCCAGTTGCGGCCCGGTCCAGGAGATACCGATGCTTGGTTCCCAAAAGCAGTTGTTCAGCCAAGAGTTTATGAAGGTGATGCAAGAGATGATACGAGTGGAAGTGAGAAATTACATGTCTGTACTGGAACGTAATGGTGTGTGTATGCAAACCGATGCCATTAGGATCTCGGTGTTGGAGAGGATGGGAATTGGTAGGGTTGAATAA 798 0.5439 MASAKDMDRIKGPWSPEEDEALRRLVQTYGPRNWSVISKSIPGRSGKSCRLRWCNQLSPEVERRPFTAEEDEAILKAHARFGNKWATIARFLNGRTDNAIKNHWNSTLKRKCSEPLSEPRPLKRSATVSGSQSGSDLSDSGLPIILARSVSVTVAPSNHLAETASSSVTDPATLLSLSLPGFDSCDGANNGPGPNQGPSCGPVQEIPMLGSQKQLFSQEFMKVMQEMIRVEVRNYMSVLERNGVCMQTDAIRISVLERMGIGRVE* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0369 265 CDD SANT 65 108 IPR001005 -
Gso4g0369 265 SMART sant 10 59 IPR001005 -
Gso4g0369 265 SMART sant 62 110 IPR001005 -
Gso4g0369 265 Gene3D - 64 129 - -
Gso4g0369 265 Gene3D - 10 62 - -
Gso4g0369 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 112 IPR017930 -
Gso4g0369 265 MobiDBLite consensus disorder prediction 111 137 - -
Gso4g0369 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 61 IPR017930 -
Gso4g0369 265 ProSiteProfiles Myb-like domain profile. 6 57 IPR001005 -
Gso4g0369 265 PANTHER MYB PROTEIN-RELATED 7 236 - -
Gso4g0369 265 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 7 236 - -
Gso4g0369 265 CDD SANT 13 55 IPR001005 -
Gso4g0369 265 Pfam Myb-like DNA-binding domain 14 71 - -
Gso4g0369 265 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Gso4g0369 265 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0369 Gso-Chr4 3376869 3378169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0369 5 265 MYB Transcription Factor Family AT4G37260 47.826 6.73e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso4g0369 Myb_DNA-bind_6 7.1e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0369 4 3376869 3378169 Gso4g0369 4 3376869 3378169 ECH
Gso14g0743 14 7739874 7741197 Gso4g0369 4 3376869 3378169 PCT
Gso17g2023 17 39680996 39682326 Gso4g0369 4 3376869 3378169 PCT
Gso4g0369 4 3376869 3378169 Gso14g0743 14 7739874 7741197 PCT
Gso4g0369 4 3376869 3378169 Gso17g2023 17 39680996 39682326 PCT