Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0366 ATGGCTTACCACCATCAAAAATCCCTTTTGGACACCCTATACTGCTCCGAAGAGCATTGGATAGGGGAAGGTGAATTTGACCAAGCAGAGGAGGAGTACGGTAACAGTAATAGCAATAGTAGCAGCACCTTAGTAAACAACTCCCCTGAGTCCTCCCCTCATTTGTTGCTCGAAAGCGACATGTTTTGGGACGAACAAGAGTTGGCATCGCTGTTGGAGAAAGAACAACACAACCCACTAAGCACTTGCTGTCTCCAAAGCAACCCTGCCTTGGAGGGTGCTCGCATAGAAGCCGTGGAGTGGATTCTCAAAGTAAACGCCCACTACTCCTTCTCTGCCCTCACCGCTGTTCTTGCTGTCAACTACTTTGACCGTTTTCTCTTCAGCTTCCGCTTTCAGAATGACATTAAGCCATGGATGACTCGGCTCGCTGCCGTCGCTTGCCTCTCCCTCGCTGCCAAAGTGGACGAGACACACGTTCCCTTTCTTATTGACCTTCAACAAGTGGAGGAGAGTAGATACTTGTTCGAAGCCAAGACGATTAAAAAGATGGAGATTTTGATCCTTTCCACTCTTGGATGGAAGATGAACCCTCCAACCTCTCTCTCTTTTCTTGATTACTTCACAAGAAGACTTGGATTGAAGGATCATCTCTTCTGGGAGTTCCTCACTAAGTCTGAAGGCGTTCTTCTCTCCCTCATTGGAGATTCGAGGTTCATGAGTTATCTACCTTCTGTGTTGGCAACTGCTACGATGATGCAAGTTCTGAAAAGCGTAGAGCCTAGTCTAGAAGCTGAATACAAGAGCCAGCTATTTGGTATTCTCAGAATCGACAAGGAGAAGGTGAATTCGTGTTGCAAGCTGATGCTGGAATTGTGGTCAGAGTTCGAGGGGAAGCAATGCATGAAACGCAAGTTTGGAATAGGGTGGATTCCTGGAAGCCCAAACGGCGTGATGGATGTGTCGTTTAGCTGTGATAGTAGCTCCAATGACTCTTGGGTCTCTTCCTCACCGGAACCATTGTCAAAGAAGAGTAGGAGTGAAAAATAG 1050 0.4714 MAYHHQKSLLDTLYCSEEHWIGEGEFDQAEEEYGNSNSNSSSTLVNNSPESSPHLLLESDMFWDEQELASLLEKEQHNPLSTCCLQSNPALEGARIEAVEWILKVNAHYSFSALTAVLAVNYFDRFLFSFRFQNDIKPWMTRLAAVACLSLAAKVDETHVPFLIDLQQVEESRYLFEAKTIKKMEILILSTLGWKMNPPTSLSFLDYFTRRLGLKDHLFWEFLTKSEGVLLSLIGDSRFMSYLPSVLATATMMQVLKSVEPSLEAEYKSQLFGILRIDKEKVNSCCKLMLELWSEFEGKQCMKRKFGIGWIPGSPNGVMDVSFSCDSSSNDSWVSSSPEPLSKKSRSEK* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0366 349 CDD CYCLIN 95 189 IPR013763 -
Gso4g0366 349 Gene3D - 69 287 - -
Gso4g0366 349 Gene3D - 81 197 - -
Gso4g0366 349 MobiDBLite consensus disorder prediction 28 52 - -
Gso4g0366 349 MobiDBLite consensus disorder prediction 31 52 - -
Gso4g0366 349 Pfam Cyclin, N-terminal domain 70 197 IPR006671 -
Gso4g0366 349 PANTHER CYCLIN D3.1 PROTEIN 5 346 - -
Gso4g0366 349 PANTHER CYCLINS 5 346 IPR039361 -
Gso4g0366 349 Pfam Cyclin, C-terminal domain 199 307 IPR004367 -
Gso4g0366 349 SUPERFAMILY Cyclin-like 62 197 IPR036915 -
Gso4g0366 349 MobiDBLite consensus disorder prediction 326 349 - -
Gso4g0366 349 ProSitePatterns Cyclins signature. 95 126 IPR006671 -
Gso4g0366 349 MobiDBLite consensus disorder prediction 326 341 - -
Gso4g0366 349 SUPERFAMILY Cyclin-like 181 295 IPR036915 -
Gso4g0366 349 SMART Cyclin_C_2 199 327 IPR004367 -
Gso4g0366 349 SMART cyclin_7 100 190 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0366 Gso-Chr4 3341155 3342632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0366 9 292 Core Cell Cycle Gene Families AT4G34160 51.408 1.38e-88 269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0366 4 3341155 3342632 Gso4g0366 4 3341155 3342632 ECH
Gso4g0366 4 3341155 3342632 Gso6g0346 6 3257612 3259735 GST
Gso14g0740 14 7676417 7678744 Gso4g0366 4 3341155 3342632 PCT
Gso17g2027 17 39742674 39744863 Gso4g0366 4 3341155 3342632 PCT
Gso4g0366 4 3341155 3342632 Gso14g0740 14 7676417 7678744 PCT
Gso4g0366 4 3341155 3342632 Gso17g2027 17 39742674 39744863 PCT