Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0363 ATGGGTACTAACAGATCTTTAATGGCCACGATCCTCATCGTGTTCTTCACGGTGTTGGCAGTGTCATCGGCGTTGGACATGTCGATAATCTCGTATGACAGAAGCCACGCGGACAAGTCAGGGTGGAAGAGTGACGAGGAGGTAATGAGTATATACGAGGAGTGGCTTGTGAAGCATGGGAAGGTGTATAACGCCGTCGAAGAGAAGGAGAAGAGGTTTCAGATCTTCAAAGACAACCTCAACTTTATCGAAGAACACAATGCTGTGAACCGGACATACAAGGTTGGACTGAACCGGTTCAGTGATCTTAGCAACGAGGAGTACCGGTCAAAATACCTGGGAACCAAGATTGATCCCCGCAGAATGATGGCCAGACCAAGTAGACGTTACTCTCCGCGCGTGGCTGACAATTTGCCGGAATCTGTTGATTGGAGGAAAGAAGGTGCTGTTGTCAGAGTCAAAAACCAATCAGAATGCGAGGGCTGCTGGGCATTCTCAGCAATTGCCGCAGTTGAAGGAATTAACAAGATAGTAACAGGCAATCTAACTGCACTGTCAGAGCAAGAACTGTTGGACTGTGATAGAACCGTCAATGCAGGATGTAGTGGCGGACTTGTGGACTATGCCTTTGAGTTCATTATCAACAATGGTGGCATTGACACTGAAGAGGATTACCCCTTTCAAGGTGCTGATGGTATCTGTGATCAATACAAGATAAATGCTAGAGCTGTTACAATTGATGGTTACGAACGTGTTCCTGCTTATGATGAATTAGCCTTGAAAAAGGCAGTAGCAAATCAACCCGTGAGCGTTGCCATTGAAGCATATGGCAAAGAGTTTCAATTATATGAATCTGGTATATTCACAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCTGTTGGGTACGGAACAGAAAATGGAATTGACTATTGGATCGTCAAAAATTCATGGGGTGAGAATTGGGGAGAGGCAGGTTATGTAAGAATGGAACGTAATATAGCAGAAGACACTGCAGGAAAGTGTGGAATTGCGATTCTGACATTGTATCCCATAAAGATTGGCCAAAATCCCTCAAACCCAGATAACTCCAGCTAA 1104 0.4502 MGTNRSLMATILIVFFTVLAVSSALDMSIISYDRSHADKSGWKSDEEVMSIYEEWLVKHGKVYNAVEEKEKRFQIFKDNLNFIEEHNAVNRTYKVGLNRFSDLSNEEYRSKYLGTKIDPRRMMARPSRRYSPRVADNLPESVDWRKEGAVVRVKNQSECEGCWAFSAIAAVEGINKIVTGNLTALSEQELLDCDRTVNAGCSGGLVDYAFEFIINNGGIDTEEDYPFQGADGICDQYKINARAVTIDGYERVPAYDELALKKAVANQPVSVAIEAYGKEFQLYESGIFTGTCGTSIDHGVTAVGYGTENGIDYWIVKNSWGENWGEAGYVRMERNIAEDTAGKCGIAILTLYPIKIGQNPSNPDNSS* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0363 367 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 33 359 - -
Gso4g0363 367 SMART pept_c1 138 354 IPR000668 GO:0006508|GO:0008234
Gso4g0363 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 313 332 IPR025661 -
Gso4g0363 367 PRINTS Papain cysteine protease (C1) family signature 156 171 IPR000668 GO:0006508|GO:0008234
Gso4g0363 367 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Gso4g0363 367 PRINTS Papain cysteine protease (C1) family signature 313 319 IPR000668 GO:0006508|GO:0008234
Gso4g0363 367 PANTHER CYSTEINE PROTEASE 33 359 - -
Gso4g0363 367 SUPERFAMILY Cysteine proteinases 44 354 IPR038765 -
Gso4g0363 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 296 306 IPR025660 -
Gso4g0363 367 CDD Peptidase_C1A 139 353 IPR039417 -
Gso4g0363 367 Pfam Cathepsin propeptide inhibitor domain (I29) 52 108 IPR013201 -
Gso4g0363 367 Pfam Papain family cysteine protease 138 354 IPR000668 GO:0006508|GO:0008234
Gso4g0363 367 SMART Inhibitor_I29_2 52 108 IPR013201 -
Gso4g0363 367 Gene3D Cysteine proteinases 31 356 - -
Gso4g0363 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 156 167 IPR000169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0363 Gso-Chr4 3304514 3308234 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0363 4 3304514 3308234 Gso4g0363 4 3304514 3308234 ECH
Gso14g0736 14 7615700 7620184 Gso4g0363 4 3304514 3308234 PCT
Gso17g2032 17 39805049 39809347 Gso4g0363 4 3304514 3308234 PCT
Gso4g0363 4 3304514 3308234 Gso14g0736 14 7615700 7620184 PCT
Gso4g0363 4 3304514 3308234 Gso17g2032 17 39805049 39809347 PCT