Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0350 ATGCAAGGGCAGAGAGGTACAGTTGTTTCAATGCCTGAAACCTTAGAATTTGATTGTGGATCTGCATCTGGCAATTCTACTGCGGATCAGCAAATTTGCTGGAATAATGTGAATCCTGCAGAGAACCAAATTCCTGATTATATACTTTCTCCTTGTGATATGAACTCATCCTATGACAATTCTATTATTAATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGGGAGCCAAGTTCCAGTAATACACCAAATGAGATTAACAATAATGAGCAAAAAAGAGAACTTGGATGGTCATCAACCATTACTGCTGGTGCATTGGCTGGTCCAAGCCTAGAAGAAAGGCGCCTTGAACCAACCAATGCTCTTTCACTAGACAATGTCAATACAGGTCCTATCTACATCTGTAGCCCCAATTCTCATTTGATGTCCCAGAATCTCAACTTAAATGCAGGTTTAGCGGACAGTGGCAGTGATGATAGTCAACATCTGGAGCTCCCTAACTTAAACAAGTCTAGTGGGTCAGCAAACGAGTGTATACCACCTAATGTTGGATCTGGTTCTTTTCTGCTTCCTTCTGGAAATAATGCCTTCCTGGTAGAAGATACTGATGGTAGGCCTAGTTGTTCTCTTGATACTCGGCGGGTCTCTTGTAAACGAAAGGCTGTTGAAGGAAATAATGGACAATCGTCAGATGCTGGGAGTTCTAGCTACAGTCAGCATACAGATGGTAGTGCATGGCACACCATTCCTACTCAGGATAATGCTGGAAGCAGTTCGAGAAGATCTATTCCCTCAGAAGAGGTAAACGCAAGACTTGGCCTGGGTATCGGGGATGAAGCATCTGAAAATGTTTCTGATTCAAAAACTGCGGGAAGCTCAGAAAGCTTTCACAGGAATTTCCGTTTGAGGTTAAATCCTTCAAACCCAGCAAATTCTGTTCCTCCCACCGCATTCTCAACTGGGAGCATGATTAGGCATTCTGGTGTTTCTCCATCCTCTCAAGTATCACAAAGACTTCATTCTGTTGATAATTCTCTGAACTCGAGGTCGGCACCACCGATAGATAATGTGGTTCCTCAAAGCCAGCCACATGTAATCCATGTCCCTGCTTTGCCCAGGAATAGACAATCATTTAGATGGAGTGGTGGTTCTAGCTCCAGAAACATCCATTCATCAAACTCAATTATATCCCCAGCCAGGGATCAGGAGGATGCAAGCTCAAGAAGAATGTCCAGAAATATGTTAGAACATCCAGTCTTTCAACCTGCAACTGATTTAAGAAATTTAGTTCAAAATCCAACAGTTAGAGCTTCAAGTTCAAGTAGTGTAAATTTAAGTATTCCAGGAAATGTTGCTTCATCACGGACTGGATCAAATCCAGCTACCAATCCCTCATCTGCCCCAACTTGGGTTTCTCCTCCTAATCCTCCACAGCATCCACGGAGGTTATCTGAATATGTCCGTCGGTCCTTGTTTTCTCCCAGTTCTGATGCTATTGGAAGTCCAAGCAATAATTATTCTTCCTTGCGCTCTGGTTTTTCTACATCTGAACCAAGGGCGTTATCATCTGGGAGTGGGGCAAACCCGAGATCATCTTCATGGTTGGAGAGGCAAGGAGGTAGTGAATTTGGAATTCCTTATTCACTACGTACTTTGGCTGTTGCAAGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCACAATGTTTTGGGCCGAATGCGTAGAGGTGGGAACATGCGATTTGAGGATGTTGTGATCCTTGAGCATCAATCATTTCTTTCTGGAATAGCTGATGTTCATGATCGACACGGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGTTGTTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAACCCTATCGAAACTCTTGAAACAGAGAAAACACTCGGTTGAAAAAGGGTCTGAGACTGATGCAGAACCCTGTTGTGTTTGTCAGGAGGATTATGGTGATGGGAATGATATTGGAACGCTTGATTGTGGCCATGATTTCCATAGCAGCTGTATCAAACAGTGGCTAATGCAAAAGAATCTGTGTCCCATTTGTAAGACAACGGGCTTGGCAACATGA 2124 0.4336 MQGQRGTVVSMPETLEFDCGSASGNSTADQQICWNNVNPAENQIPDYILSPCDMNSSYDNSIINHEWQNLSGWSLGEPSSSNTPNEINNNEQKRELGWSSTITAGALAGPSLEERRLEPTNALSLDNVNTGPIYICSPNSHLMSQNLNLNAGLADSGSDDSQHLELPNLNKSSGSANECIPPNVGSGSFLLPSGNNAFLVEDTDGRPSCSLDTRRVSCKRKAVEGNNGQSSDAGSSSYSQHTDGSAWHTIPTQDNAGSSSRRSIPSEEVNARLGLGIGDEASENVSDSKTAGSSESFHRNFRLRLNPSNPANSVPPTAFSTGSMIRHSGVSPSSQVSQRLHSVDNSLNSRSAPPIDNVVPQSQPHVIHVPALPRNRQSFRWSGGSSSRNIHSSNSIISPARDQEDASSRRMSRNMLEHPVFQPATDLRNLVQNPTVRASSSSSVNLSIPGNVASSRTGSNPATNPSSAPTWVSPPNPPQHPRRLSEYVRRSLFSPSSDAIGSPSNNYSSLRSGFSTSEPRALSSGSGANPRSSSWLERQGGSEFGIPYSLRTLAVASEGSSRLVSELHNVLGRMRRGGNMRFEDVVILEHQSFLSGIADVHDRHGDMRLDVDNMSYEELLALEERIGNVSTGLSEETLSKLLKQRKHSVEKGSETDAEPCCVCQEDYGDGNDIGTLDCGHDFHSSCIKQWLMQKNLCPICKTTGLAT* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0350 707 MobiDBLite consensus disorder prediction 495 536 - -
Gso4g0350 707 SUPERFAMILY RING/U-box 649 703 - -
Gso4g0350 707 MobiDBLite consensus disorder prediction 75 95 - -
Gso4g0350 707 MobiDBLite consensus disorder prediction 221 296 - -
Gso4g0350 707 CDD RING-H2_TTC3 659 701 - -
Gso4g0350 707 MobiDBLite consensus disorder prediction 435 467 - -
Gso4g0350 707 ProSiteProfiles Zinc finger RING-type profile. 660 701 IPR001841 -
Gso4g0350 707 MobiDBLite consensus disorder prediction 435 482 - -
Gso4g0350 707 MobiDBLite consensus disorder prediction 378 402 - -
Gso4g0350 707 MobiDBLite consensus disorder prediction 153 178 - -
Gso4g0350 707 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 706 - -
Gso4g0350 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 704 IPR013083 -
Gso4g0350 707 MobiDBLite consensus disorder prediction 223 266 - -
Gso4g0350 707 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 706 IPR045191 GO:0061630
Gso4g0350 707 SMART ring_2 660 700 IPR001841 -
Gso4g0350 707 MobiDBLite consensus disorder prediction 376 410 - -
Gso4g0350 707 Pfam Ring finger domain 660 701 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0350 Gso-Chr4 3149769 3157734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0350 217 707 C3H Transcription Factor Family AT2G15530 37.736 7.76e-75 253
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0350 4 3149769 3157734 Gso6g0333 6 3097997 3105617 GST
Gso17g2046 17 39988630 39993771 Gso4g0350 4 3149769 3157734 PCT
Gso4g0350 4 3149769 3157734 Gso17g2046 17 39988630 39993771 PCT