Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0349 ATGGCTGTTCTTCTAGACAACTGTGAAGGCATTTTACTCTCTTTGGACTCACACAAATCAGTGCCAGCTCCTTTCCTCACCAAGACATACCAACTTGTGGACGAACCCACCACAGATCACATTGTTTCTTGGGGCGAAGACGACACCACCTTCGTCGTTTGGCGTCCTCCTGAATTCGCCAGAGACCTTCTTCCTAACTACTTCAAACACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGTTTTAGAAAGATTGTGCCAGACCGATGGGAGTTCGCGAACGAATTCTTCAAGAAGGGAGAGAAACACTTGCTGTGCGAGATCCATAGAAGAAAAACGGCTCAGCCTCAACAAGGAATCATGAACCACCATCACCACCATGCTCATTCTCCGTTGGGAGTCAACGTTAACGTTCCAACTTTCTTTCCCTTCTCCAGCAGAGTCAGCATCTCTACTTCCAACGACTCCGACGACCAATCCAACTGGTGCGACTCGCCGCCACGTGGAGCCACCTCATTGGTGAACGGTGCAGCAGCAGCCAACTACAACACTTCCGTCACGGCGCTTTCGGAGGACAACGAGAGACTCAGAAGAAGCAACAACATGCTCATGTCGGAACTCGCGCACATGAAGAAGCTCTACAATGACATCATCTACTTCGTTCAGAACCATGTCAAGCCAGTGGCTCCAAGCAATTCTTACTCTTCTTCTTTGCTACTATGCAATACACCTTCTGCCACTCCAATAAGTAGTGCCAATAATGTTTCAATGATGCAAAGGCCAATGAACCAGCTTCTGGGGTATTATTCTACTAACCCTAAACAAGGAGCTACACAAATTACTCAACCTCAGACCTATGTTGTGAACTCTCCCACCAACACATCAAGGAGTTCTATAACAATTTTTGAAGGGCCTGCCAGCAGTAACATTAATAGCTGCAAGACCAAGCTTTTTGGGGTGTCGCTGCAGTCCAAGAAAAGGGTGCACCCGGATTGTGGATCTAATCCAGAGACCAACAGGGCTCGTTTGGTTTTGGAAAAAGATGACTTGGGCTTGAATCTCATGCCTCCATCCACTTGTTAG 1092 0.4753 MAVLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDEPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQQGIMNHHHHHAHSPLGVNVNVPTFFPFSSRVSISTSNDSDDQSNWCDSPPRGATSLVNGAAAANYNTSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSSLLLCNTPSATPISSANNVSMMQRPMNQLLGYYSTNPKQGATQITQPQTYVVNSPTNTSRSSITIFEGPASSNINSCKTKLFGVSLQSKKRVHPDCGSNPETNRARLVLEKDDLGLNLMPPSTC* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0349 363 Gene3D - 17 116 IPR036388 -
Gso4g0349 363 PANTHER BNAC06G00310D PROTEIN 12 238 - -
Gso4g0349 363 PANTHER BNAC06G00310D PROTEIN 290 362 - -
Gso4g0349 363 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 238 IPR027725 -
Gso4g0349 363 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 290 362 IPR027725 -
Gso4g0349 363 Coils Coil 189 209 - -
Gso4g0349 363 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso4g0349 363 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso4g0349 363 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso4g0349 363 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso4g0349 363 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso4g0349 363 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso4g0349 363 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0349 Gso-Chr4 3132554 3134203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0349 1 362 HSF AT1G46264 55.297 4.88e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso4g0349 HSF_DNA-bind 7.5e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0349 4 3132554 3134203 Gso4g0349 4 3132554 3134203 ECH
Gso4g0349 4 3132554 3134203 Gso6g0332 6 3078273 3079887 GST
Gso14g0718 14 7312610 7314539 Gso4g0349 4 3132554 3134203 PCT
Gso17g2049 17 40048502 40050416 Gso4g0349 4 3132554 3134203 PCT
Gso4g0349 4 3132554 3134203 Gso14g0718 14 7312610 7314539 PCT
Gso4g0349 4 3132554 3134203 Gso17g2049 17 40048502 40050416 PCT