Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0338 ATGCAAGGTTCTAGTCTTAAAAAGATGCTGAAGACAATGCCATCTAAAGCTTCGATTACCAGAATCAATTTGGTCTTCCTTGTTGTATTTCTGGTTGTTTATGCCACTGTTCTTCCCCATCCATCTTCTGACTATTTGCAGGATGCAGGATCCATAGTGAGGTGCTCTTTGGGCGAATGTCATCACAGGGTAAGACACGAAAACTTCAAAATGAAAGCGGCATTGGATGAACCTCAAGCAAACCCACAGAGGCAAAAGAATAAGAGTGCAAAGAAGATAGAAGTACCAAGCTTTTTTAGCAAGTTAGGGGAAAGAATGAAGATTGGAATGGTAAACATGAAAGAAAACGATGTAAGTAACTGGAGCACGCATGGGGAAAGGACAAGCGTTTATTTTGAGAGGGTATCGCAGTTTTTGAACTGGACGGACTTGTTTCCCGAATGGATAGACGAGGAGGAAGAGAATGATGTGCCATCATGTCCAGAGATACCTATGCCGGAGTATGCAGAATACGGAAGCATGGACGTGATCGTGGCTAAGCTGCCATGCAGGTATCCCGAAGAAGGGTGGAAGAGGGACGTTTTCCGGTTGCAAGTTCATCTTATAGTTGCGAATCTAGCCGTGAAGAAGGGGAAGAAGGATTGGAGAGGGAAGACAAGAGTAGTTTTTTGGAGCAAGTGTAGACCAATGCTGGAGCTGTTTCCATGCGACAACTTGGTTAAGGGTGAAGGTGAATGGTGGTATTATGAACCTGAGGTGAAGAGGTTAGAACACAAGGTTTCATTGCCCATTGGGTCCTGCAAGTTGGCCTTGCCTCTCTGGGAACAAGTTGTCGACGAGGTGTACGAATTATCCAAGATTGAGAAAAGCGTTGAAAGCAGAAGGAGAATAAAACGCGAAGCGTACGCAACAGTGCTGCATTCTTCGGAAGCGTACGTTTGCGGCGCAATAACACTAGCGCAAAGCCTGCTCCAAACAGGTACCAAACGCGACCTTATCCTCCTGATAGACAAGTTCATCTCGGTTCGTAAACGCGAGGCCCTATCCGAAGCGGGTTGGAAGATCCGAATCATCACCCGGATCCGAAACCCGAAGGCCGAGAAAGGAAGCTACAACGAATACAACTACAGCAAGTTCAGGCTATGGCAGCTCACGGACTACGACAAAGTAATCTTCATCGACTCCGACATCATCGTACTCCGAAACCTCGACATCCTCTTCCACTTCCCGCAGATAACGGCCACGGGGAACGACCAATCGATATTCAACTCGGGAATAATGGTGATCGAACCTTCCAAGTGCACGTTCCGTACATTGATGCGGCACCGGGACGACGTCGTTTCGTACAACGGAGGGGACCAGGGGTTTCTGAACGAGGTGTTCGTGTGGTGGCACAGGCTGCCGCGGAGGGTGAACTTTCTGAAGAACTTCTGGGCGAACACGACGGTGGAGGCGAGGGCGAAGAACGCGTTGTTCGCGGCGGAGCCGGCGGAGGTCTACGCGATTCACTACCTGGGATGGAAGCCGTGGCACTGCTACAGGGACTATGACTGCAACTGGGACACCCCGGAGCAGAGGGTGTACGCCAGTGACGTGGCGCATCGGAGGTGGTGGAAGGTTCACGACGCGATGGAGGAGGGGTTGCAGAGGTTGTGTAGGTTGACGAAACGGCGTCGGAGTGAGTTGAACTGGGAGAGGAGGAAGGCCAGCAAGATGAGGTTACCCGATGGACATTGGAAAATCAATATCACTGATCCCAGACGATTTGCCTCTCTCTTTATGGATTAG 1788 0.4983 MQGSSLKKMLKTMPSKASITRINLVFLVVFLVVYATVLPHPSSDYLQDAGSIVRCSLGECHHRVRHENFKMKAALDEPQANPQRQKNKSAKKIEVPSFFSKLGERMKIGMVNMKENDVSNWSTHGERTSVYFERVSQFLNWTDLFPEWIDEEEENDVPSCPEIPMPEYAEYGSMDVIVAKLPCRYPEEGWKRDVFRLQVHLIVANLAVKKGKKDWRGKTRVVFWSKCRPMLELFPCDNLVKGEGEWWYYEPEVKRLEHKVSLPIGSCKLALPLWEQVVDEVYELSKIEKSVESRRRIKREAYATVLHSSEAYVCGAITLAQSLLQTGTKRDLILLIDKFISVRKREALSEAGWKIRIITRIRNPKAEKGSYNEYNYSKFRLWQLTDYDKVIFIDSDIIVLRNLDILFHFPQITATGNDQSIFNSGIMVIEPSKCTFRTLMRHRDDVVSYNGGDQGFLNEVFVWWHRLPRRVNFLKNFWANTTVEARAKNALFAAEPAEVYAIHYLGWKPWHCYRDYDCNWDTPEQRVYASDVAHRRWWKVHDAMEEGLQRLCRLTKRRRSELNWERRKASKMRLPDGHWKINITDPRRFASLFMD* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0338 595 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 298 546 IPR029044 -
Gso4g0338 595 SUPERFAMILY Nucleotide-diphospho-sugar transferases 300 549 IPR029044 -
Gso4g0338 595 PANTHER GLYCOGENIN SUBFAMILY MEMBER 7 588 - -
Gso4g0338 595 Pfam Glycosyl transferase family 8 305 511 IPR002495 GO:0016757
Gso4g0338 595 CDD GT8_Glycogenin 300 544 - -
Gso4g0338 595 PANTHER UDP-GLUCURONATE:XYLAN ALPHA-GLUCURONOSYLTRANSFERASE 2 7 588 IPR030519 GO:0005794|GO:0009834|GO:0015020|GO:0045492
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0338 Gso-Chr4 3040726 3045927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0338 71 594 Glycosyltransferase AT4G33330 66.226 0.0 732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0338 4 3040726 3045927 Gso4g0338 4 3040726 3045927 ECH
Gso14g0706 14 7155908 7166046 Gso4g0338 4 3040726 3045927 PCT
Gso17g2059 17 40171546 40176951 Gso4g0338 4 3040726 3045927 PCT
Gso4g0338 4 3040726 3045927 Gso14g0706 14 7155908 7166046 PCT
Gso4g0338 4 3040726 3045927 Gso17g2059 17 40171546 40176951 PCT