Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0333 ATGTCTGCTCAGAGTGAACACCAATCGGTTTCTCTTTCGGTGCTGCTGAAGCGAGAGTTGGCGAATGAGAAAAATGAGAAGCCGGAGGTTGTTATTTTGCACGGCCAAGCTAGCGAGAATAAGAAAGGAGAGGATTTCACGCTATTGAAGACGGAATGCCAAAGGGTGCTGGGAGATGGGGTTTCTACCTATTCTGTTTTTGGGCTATTCGATGGACACAATGGATCTGCTGCCGCTATTTATGCCAAGGAGAATCTTCTAAACAATGTTTTAAGTGCAATTCCTTCTGATCTTAACAGAGATGAGTGGGTAGCAGCGTTGCCTAGGGCTTTGGTTGCAGGCTTTGTAAAAACTGATAAGGATTTTCAAGAGAAAGCACAAACATCGGGAACAACTGTAACCTTTATGATTACAGAAGGATGGGTTGTAACAGTTGCATCAGTTGGTGATTCCCGTTGCATACTGGAGCCTTCTGAAGGTGGAATTTATTACTTGTCAGCAGACCATAGACTAGAGAGCAATGAAGAGGAGAGGGTACGCATCACTTCTAGTGGAGGTGAGGTTGGTCGTCTAAATACAGGAGGAGGCACCGAGGTTGGTCCTTTGAGATGTTGGCCTGGTGGCTTGTGTCTCTCACGATCCATTGGTGATATGGATGTTGGTGAATTTATTGTCCCTGTACCACACGTAAAGCAAGTGAAGCTTTCCACTGCTGGAGGCAGGATTATTCTCAGCAGTGATGGTGTCTGGGATGCTCTAAGTGCAGAAATGGCCCTTGATTGCTGTCGTGGCATGTCACCTGAGGCTGCAGCAACCCATATTGTGAAAGAATCTGTGCAAGCAAAGGGACTTAGAGATGACACAACCTGCATTGTTATTGACATATTACCCCAGGAGAAGCCACCTACTTCTGTGCTAACACAAAAGAAACCGGTAAAAGGAATGCTTAAGTCCATTTTTCGCAAAAAGTCCTCTGAATCATCATCTTTTATTGACAAAGAATACCTGGAGTCAGATGTGGTACAGGAACTATACGAGGAAGGGTCTGCTATGCTTTCAGAGAGATTAGAAACAAAATATCCACTTTGCAACATGTTCAAGCCGTTTACCTGCGCAGTGTGTCAGGTAGAGATTAAACCTGGAGAAGGTATTTCCATACACGAGGGTGTGCCTAACCCAGGAAGATTGCGTCCCTCATATGGACCTTTCCTTTGCCCAAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAGCGAACATCAGATAGACTTAGCAGCGGGAGTGACTAA 1290 0.4535 MSAQSEHQSVSLSVLLKRELANEKNEKPEVVILHGQASENKKGEDFTLLKTECQRVLGDGVSTYSVFGLFDGHNGSAAAIYAKENLLNNVLSAIPSDLNRDEWVAALPRALVAGFVKTDKDFQEKAQTSGTTVTFMITEGWVVTVASVGDSRCILEPSEGGIYYLSADHRLESNEEERVRITSSGGEVGRLNTGGGTEVGPLRCWPGGLCLSRSIGDMDVGEFIVPVPHVKQVKLSTAGGRIILSSDGVWDALSAEMALDCCRGMSPEAAATHIVKESVQAKGLRDDTTCIVIDILPQEKPPTSVLTQKKPVKGMLKSIFRKKSSESSSFIDKEYLESDVVQELYEEGSAMLSERLETKYPLCNMFKPFTCAVCQVEIKPGEGISIHEGVPNPGRLRPSYGPFLCPSCQEKKEAMEGKRTSDRLSSGSD* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0333 429 SMART PP2C_4 19 293 IPR001932 -
Gso4g0333 429 PANTHER ALPHABET, ISOFORM E-RELATED 2 425 - -
Gso4g0333 429 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 2 425 - -
Gso4g0333 429 SUPERFAMILY PP2C-like 40 295 IPR036457 -
Gso4g0333 429 CDD PP2Cc 40 295 IPR001932 -
Gso4g0333 429 ProSiteProfiles PPM-type phosphatase domain profile. 29 295 IPR001932 -
Gso4g0333 429 SMART PP2C_SIG_2 56 295 IPR001932 -
Gso4g0333 429 Pfam Protein phosphatase 2C 59 277 IPR001932 -
Gso4g0333 429 Gene3D - 24 302 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0333 Gso-Chr4 3003748 3008074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0333 1 429 PP2C-type Phosphatase Gene Family AT1G47380 78.372 0.0 700
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0333 4 3003748 3008074 Gso4g0333 4 3003748 3008074 ECH
Gso4g0333 4 3003748 3008074 Gso6g0317 6 2943544 2948586 GST
Gso14g0702 14 7099635 7105285 Gso4g0333 4 3003748 3008074 PCT
Gso17g2062 17 40249124 40254751 Gso4g0333 4 3003748 3008074 PCT
Gso4g0333 4 3003748 3008074 Gso14g0702 14 7099635 7105285 PCT
Gso4g0333 4 3003748 3008074 Gso17g2062 17 40249124 40254751 PCT