Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0324 ATGCAACCAACATCGAACGGCTCTGACTCGAAAGCGACGGAGCAGCGGACGCCGCCGCCTCAGCCAGTGGCCGTGCCGCCGCAGTGGATGCCGATGCAATACCCGGCGGCGGCGATGGTAATGCAGCACCACATGATGCCGCCTCAGCATTACGCGCCGCCGCAGCCCTACATGGCCTACCACCAGTACCAGCAGCAGGTGCCGCAAGCGCACCACCTGGGATCCAGCGCCGAGAACAAGACCGTTTGGGTCGGCGATTTGCATCACTGGATGGACGAAAATTATCTCCACCGCTGTTTTGCTTCCACCGGCGAGATTTCCTCCATTAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACATGGCACAGCTGATAAAGTTTTGCAGAATTATGCTGGGATATTGATGCCTAACACCGAGCAACCGTTCCGCCTGAACTGGGCAACATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCATGTTGCATGAAACTTTTACTAATAGATACCCATCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGACGATAATGAGAGGTCTCAGGCTATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGACCTATGCGTATTGGTGCTGCAACTCCTAGGAAAACGTCTGGCTATCAACAAGGAAGTCAGTCAAATGGCACATCCAGCCAATCTGAAGCTGATTCTACAAACACAACTATATTTGTTGGAGGACTTGACCCTAATGTTACAGCTGAAGATCTTAAGCAACCATTCTCCCAGTATGGTGAGATAGTCTCTGTCAAAATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAACGATTGGCAAGCAAATGGTTCGTCTTTCATGGGGCCGCAGTCCAGCAAATAAGCAGTTTAGAGCAGATTTTGGCAATGCTTGGAGTGGGGCGTATTATGGAGGGCCTGTTTATGATGGTTATGGATATGCTTTGCCACCACCTTATGACCCAAGCATATATGCTGCTGCTGCTTATGGGGCTTACCCTATTTATGGAGGATACCAACAGCAAGTAAGCTGA 1230 0.4756 MQPTSNGSDSKATEQRTPPPQPVAVPPQWMPMQYPAAAMVMQHHMMPPQHYAPPQPYMAYHQYQQQVPQAHHLGSSAENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTADKVLQNYAGILMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFTNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGTSSQSEADSTNTTIFVGGLDPNVTAEDLKQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQMVRLSWGRSPANKQFRADFGNAWSGAYYGGPVYDGYGYALPPPYDPSIYAAAAYGAYPIYGGYQQQVS* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0324 409 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 22 409 - -
Gso4g0324 409 MobiDBLite consensus disorder prediction 253 274 - -
Gso4g0324 409 CDD RRM3_NGR1_NAM8_like 277 348 - -
Gso4g0324 409 Gene3D - 79 159 IPR012677 -
Gso4g0324 409 CDD RRM2_SECp43_like 172 251 - -
Gso4g0324 409 SUPERFAMILY RNA-binding domain, RBD 156 267 IPR035979 GO:0003676
Gso4g0324 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 175 244 IPR000504 GO:0003723
Gso4g0324 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 149 IPR000504 GO:0003723
Gso4g0324 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 341 IPR000504 GO:0003723
Gso4g0324 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 350 IPR000504 GO:0003723
Gso4g0324 409 MobiDBLite consensus disorder prediction 249 274 - -
Gso4g0324 409 MobiDBLite consensus disorder prediction 1 28 - -
Gso4g0324 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 252 IPR000504 GO:0003723
Gso4g0324 409 SUPERFAMILY RNA-binding domain, RBD 39 162 IPR035979 GO:0003676
Gso4g0324 409 Gene3D - 255 357 IPR012677 -
Gso4g0324 409 SUPERFAMILY RNA-binding domain, RBD 268 378 IPR035979 GO:0003676
Gso4g0324 409 CDD RRM1_SECp43_like 81 161 - -
Gso4g0324 409 Gene3D - 172 248 IPR012677 -
Gso4g0324 409 MobiDBLite consensus disorder prediction 1 17 - -
Gso4g0324 409 SMART rrm1_1 174 248 IPR000504 GO:0003723
Gso4g0324 409 SMART rrm1_1 81 156 IPR000504 GO:0003723
Gso4g0324 409 SMART rrm1_1 279 346 IPR000504 GO:0003723
Gso4g0324 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 160 IPR000504 GO:0003723
Gso4g0324 409 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 22 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0324 Gso-Chr4 2936234 2942412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0324 277 364 Eukaryotic Initiation Factors Gene Family AT4G34110 32.632 6.18e-06 46.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0324 4 2936234 2942412 Gso4g0324 4 2936234 2942412 ECH
Gso4g0324 4 2936234 2942412 Gso6g0308 6 2873844 2880972 GST
Gso14g0690 14 6969226 6973328 Gso4g0324 4 2936234 2942412 PCT
Gso17g2074 17 40371694 40375829 Gso4g0324 4 2936234 2942412 PCT
Gso4g0324 4 2936234 2942412 Gso14g0690 14 6969226 6973328 PCT
Gso4g0324 4 2936234 2942412 Gso17g2074 17 40371694 40375829 PCT