Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0320 ATGGAAGAAATGAACAGAAGCTCCTCCTCCACTTCCTCTTCCTCTCACTGTTGCTCTTTAGAGTCCAACCATAGGAGCCCCAACAAGCCAGACAGAATCAAAGGCCCATGGAGCGCCCAAGAGGATCGGATCCTGACACGACTAGTCGAACAATACGGCCCTCGAAACTGGTCCCTCATCAGCCGCTACATTAAGGGCAGGTCCGGCAAATCGTGCCGGCTGCGGTGGTGCAATCAGCTGAGCCCCACCGTGGAGCACCGCCCCTTCTCGACCCAAGAGGACGAGACCATCATCGCTGCCCATGCCCGGTACGGTAACAGGTGGGCCACCATAGCCCGATTATTACCGGGCCGAACCGATAACGCCGTTAAGAACCACTGGAACTCCACGCTCAAGCGCAGAGCCAAGGGTATTAACGTTAATGTTAATGATGCCGACAACGAGGATGACCCGTTGACCGCATTGACTCTTGCTCCTCCCGGTATTGCTAATGCCACTTTGACCGAAGACGCCGTACCGGACCACCGGGCCTCGCCGGAGAGTGCGGCGGAGGGGTTTTGGGATATGATGAGGGATGTGATCGCGAGGGAAGTGAGGGAATATGTGTCTTCTAATTTTTCTGATAATAACTAG 633 0.5513 MEEMNRSSSSTSSSSHCCSLESNHRSPNKPDRIKGPWSAQEDRILTRLVEQYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSTQEDETIIAAHARYGNRWATIARLLPGRTDNAVKNHWNSTLKRRAKGINVNVNDADNEDDPLTALTLAPPGIANATLTEDAVPDHRASPESAAEGFWDMMRDVIAREVREYVSSNFSDNN* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0320 210 SMART sant 85 133 IPR001005 -
Gso4g0320 210 SMART sant 33 82 IPR001005 -
Gso4g0320 210 Gene3D - 33 85 - -
Gso4g0320 210 ProSiteProfiles Myb-like domain profile. 29 80 IPR001005 -
Gso4g0320 210 SUPERFAMILY Homeodomain-like 31 127 IPR009057 -
Gso4g0320 210 MobiDBLite consensus disorder prediction 1 37 - -
Gso4g0320 210 CDD SANT 88 131 IPR001005 -
Gso4g0320 210 Pfam Myb-like DNA-binding domain 37 95 - -
Gso4g0320 210 MobiDBLite consensus disorder prediction 1 24 - -
Gso4g0320 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 135 IPR017930 -
Gso4g0320 210 PANTHER MYB PROTEIN-RELATED 1 198 - -
Gso4g0320 210 PANTHER MYB TRANSCRIPTION FACTOR 1 198 - -
Gso4g0320 210 Gene3D - 87 151 - -
Gso4g0320 210 CDD SANT 36 78 IPR001005 -
Gso4g0320 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 84 IPR017930 -
Gso4g0320 210 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0320 Gso-Chr4 2887227 2888224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0320 31 150 MYB Transcription Factor Family AT3G50060 70.000 2.70e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso4g0320 Myb_DNA-bind_6 1.7e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0320 4 2887227 2888224 Gso4g0320 4 2887227 2888224 ECH
Gso4g0320 4 2887227 2888224 Gso6g0304 6 2818383 2819606 GST
Gso17g2078 17 40427503 40428457 Gso4g0320 4 2887227 2888224 PCT
Gso4g0320 4 2887227 2888224 Gso17g2078 17 40427503 40428457 PCT