Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0267 ATGGATTCAACTTGTGCAATCCTGAGTGGCCGCAATCTAGCTAAAGTTTGTGAGGGAATTGGAAGAAACAGAAGAAGTGGCTTCTGGGGTGAGAGTACGAGGCGAAGTGTGAACACAAGGTTTTTGAGTGTTCAATCATGGAAGACTTCACGTACCAGTAGGAATCTTAGAAACTCCAAGCCTGGAAGTGGAATTGCACACGCTGTTCTCACATCAGACATTAACGAAGATTCGATGGCATTTCAAGGGGTACCCACTTTTGAAAAACCCGAAGTGGACCCAAAAAGTGTGGCTTCCATCATATTGGGTGGAGGTGCAGGAACTCGACTCTTTCCTCTTACTGGCAGAAGAGCCAAGCCTGCGGTTCCAATTGGCGGGTGTTATAGACTCATAGATATCCCCATGAGCAATTGCATCAATAGTGGCATCAGAAAAATATTCATTTTGACGCAGTTCAATTCTTTCTCTCTCAACCGCCACCTGTCCCGTGCATACAGCTTCGGAAATGGAATTACTTTTGGAGATGGGTTTGTGGAGGTCTTGGCAGCTACTCAAACACCTGGAGAGGCCGGGAAGAAGTGGTTCCAAGGGACCGCCGATGCTGTAAGACAATTTATATGGGTTTTTGAGGATGCCAAGAACAAGAATGTTGAGCATATATTGATACTTTCTGGTGATCATCTTTACCGAATGGACTACATGAACTTTGTACAGAGACATGTTGACACAAATGCTGATATCACAGTTTCATGTGTACCCATGGATGACAGTCGGGCATCAGACTATGGACTGATGAAAATTGACAAAACAGGACGGATTATACAGTTTGCAGAAAAACCTAAGGGATCAGATCTAAAGGCAATGCGTGTTGACACCACTCTTCTAGGGTTATCGCCACAAGAAGCAGAAAAATATCCTTATATTGCATCCATGGGTGTCTATGTGTTTAGAACTGAAACCCTGCTGCAACTATTAAGATGGAATGGTTCTTCATGCAATGACTTTGGATCTGAAATTATCCCATCTGCTGTGAATGAGCACAATGTCCAGGCATATTTGTTCAATGACTACTGGGAAGATATTGGAACTATAAAGTCCTTCTTTGATGCAAATCTTGCCCTAACAGAACAACCTCCTAAATTTGAATTCTATGATCCAAAGACTCCTTTCTTCACTTCCCCAAGATTCCTACCACCTACCAAAGTAGAAAAATGCAAGATTGTGGATGCAATTATATCTCATGGTTGCTTCTTGAGGGAGTGTAGCATTCAACATTCCATTGTAGGAGTACGCTCACGTTTGGAGTCTGGTGTAGAGCTTCAGGATACGATGATGATGGGTGCCGACTACTATCAAACTGAGTATGAAATTGCATCTCTGCTGGCAGAAGGGAAGGTTCCAATTGGTGTTGGGGAAAATACTAAAATTAGGAATTGCATAATCGACAAGAATGCCAAGATAGGAAGAAATGTGGTCATAGAAAACATCGATGGTGTTCAAGAAGCTGACAGGGCAAAGGAAGGATTCTACATTAGATCGGGCATCACAATTACATTAAAAAATGCAACAATTAAAGATGGAACAGTTATATGA 1593 0.4231 MDSTCAILSGRNLAKVCEGIGRNRRSGFWGESTRRSVNTRFLSVQSWKTSRTSRNLRNSKPGSGIAHAVLTSDINEDSMAFQGVPTFEKPEVDPKSVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLSRAYSFGNGITFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVEHILILSGDHLYRMDYMNFVQRHVDTNADITVSCVPMDDSRASDYGLMKIDKTGRIIQFAEKPKGSDLKAMRVDTTLLGLSPQEAEKYPYIASMGVYVFRTETLLQLLRWNGSSCNDFGSEIIPSAVNEHNVQAYLFNDYWEDIGTIKSFFDANLALTEQPPKFEFYDPKTPFFTSPRFLPPTKVEKCKIVDAIISHGCFLRECSIQHSIVGVRSRLESGVELQDTMMMGADYYQTEYEIASLLAEGKVPIGVGENTKIRNCIIDKNAKIGRNVVIENIDGVQEADRAKEGFYIRSGITITLKNATIKDGTVI* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0267 530 Gene3D Hexapeptide repeat proteins 396 530 - -
Gso4g0267 530 CDD LbH_G1P_AT_C 398 524 - -
Gso4g0267 530 CDD ADP_Glucose_PP 100 361 - -
Gso4g0267 530 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 98 494 IPR011831 GO:0005978|GO:0008878
Gso4g0267 530 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 87 395 IPR029044 -
Gso4g0267 530 SUPERFAMILY Trimeric LpxA-like enzymes 392 530 IPR011004 -
Gso4g0267 530 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 194 202 IPR005836 GO:0005978|GO:0008878
Gso4g0267 530 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 1 530 IPR011831 GO:0005978|GO:0008878
Gso4g0267 530 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 309 319 IPR005836 GO:0005978|GO:0008878
Gso4g0267 530 Pfam Nucleotidyl transferase 99 376 IPR005835 GO:0009058|GO:0016779
Gso4g0267 530 SUPERFAMILY Nucleotide-diphospho-sugar transferases 97 492 IPR029044 -
Gso4g0267 530 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 1 530 - -
Gso4g0267 530 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 103 122 IPR005836 GO:0005978|GO:0008878
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0267 Gso-Chr4 2449542 2454475 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0267 4 2449542 2454475 Gso6g0246 6 2382492 2386960 GST
Gso14g0619 14 6083866 6088554 Gso4g0267 4 2449542 2454475 PCT
Gso17g2134 17 41028947 41033217 Gso4g0267 4 2449542 2454475 PCT
Gso4g0267 4 2449542 2454475 Gso14g0619 14 6083866 6088554 PCT
Gso4g0267 4 2449542 2454475 Gso17g2134 17 41028947 41033217 PCT