Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0248 ATGGACCTGGATCCTCGCCAATACGAAAACCTTGCTGTAAATGATAATGACATCCACAACATTGTTCTGTCATATCTTATACATAATTGCTACAAAGAATCGGTAGAATCATTCATTGCTTGCACGGGAGCAAAGCAGCCGACAGATTATTTGGAGGACATGGATAAAAGGAAAAGAATTTTTCACTTTGCACTAGAGGGAAATGCACTCAAGGCTATTGAGCTTACTGAACAGCTGGCAAAGGATATTCTAGAGAACAATAAGGATTTGCAGTTTGATCTACTAAGCCTTCATTTTGTTGAGCTTGTCTGCTCAAGGAAATGCACAGAAGCTTTGGAGTTTGCTCAGACCAAATTGGGCCCTTTCGGAAAGGAGCCCAAATATATGGAAAAGCTTGAAGACTTTATGGCCCTTCTTGCTTATAAGGAGCCAGAGAAATCCCCAATGTTTCATCTCCTTAGCTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCCATTCTTGCACACTTGAATCTTCCCAGTTACACAGCAATGGAGAGGCTAATACAGCAGGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAGGATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGA 645 0.414 MDLDPRQYENLAVNDNDIHNIVLSYLIHNCYKESVESFIACTGAKQPTDYLEDMDKRKRIFHFALEGNALKAIELTEQLAKDILENNKDLQFDLLSLHFVELVCSRKCTEALEFAQTKLGPFGKEPKYMEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAILAHLNLPSYTAMERLIQQATVVRQCLSQEAGKDGPPFSLKDFLKS* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0248 214 PANTHER VACUOLAR IMPORT AND DEGRADATION PROTEIN 30 8 213 - -
Gso4g0248 214 SMART toby_final6 106 201 IPR013144 -
Gso4g0248 214 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Gso4g0248 214 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 53 110 IPR006595 -
Gso4g0248 214 PANTHER RAN BINDING PROTEIN 9-RELATED 8 213 - -
Gso4g0248 214 SMART ctlh 53 110 IPR006595 -
Gso4g0248 214 Pfam CTLH/CRA C-terminal to LisH motif domain 54 192 IPR024964 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0248 Gso-Chr4 2298195 2301457 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0248 4 2298195 2301457 Gso4g0248 4 2298195 2301457 ECH
Gso4g0248 4 2298195 2301457 Gso6g0229 6 2209405 2212655 GST
Gso14g0603 14 5899321 5902723 Gso4g0248 4 2298195 2301457 PCT
Gso17g2152 17 41181003 41183893 Gso4g0248 4 2298195 2301457 PCT
Gso4g0248 4 2298195 2301457 Gso14g0603 14 5899321 5902723 PCT
Gso4g0248 4 2298195 2301457 Gso17g2152 17 41181003 41183893 PCT