Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0080 ATGAAGATCCAGTGTGCTGTGTGTGACAAAGTGGAAGCCTCCGTCTTCTGCTCTGCAGATGAAGCTGCTCTTTGCCATAGTTGTGACCGCACCATTCACCACGCCAACAAGCTTGCAACCAAACACCCACGCTTCTCTCTCCATTACCCCACCTCCCAAGACTTCCCTCTTTGTGATATTTGCCAAGAGAGGCGTGCATATCTATTTTGCCAAGAAGACAGGGCATTGCTATGCAGGGAGTGTGACGTTCCTATCCACAGGGCGAATGAGCATACCCAGAAGCATAACAGGTTTCTTCTCACCGGAGTGAAGCTCTCTGGTACTTCTTTGGATCCTGCTGCGTCCTCCACCAATTGCACCCATGGCTCTGAAGGAAGAAACAACGCTCGATCTAGAATGAACAGACCCAGATCATCAGTTTCCAATGAAGAAAATGCAAGTAATTCTTCTTGCAAGGTTGAAGACAACGTGGCTAGTGACACTGGTTCGGTTTCAACTAGCAGCATTTCTGAGTACTTGATCGAAACAATACCCGGTTACTGTTTTGAAGACCTTCTTGATGCTTCATTTGCACCTAATGGTTTCTGTAAGAACCAGAACTATGATCGTCATAGGCGTTTCAGGACCAAGATCTTCAAGTTATTAGGACGTGTTTGGTTTGAGTTAAGGAGATTCCAAAATCTTAACGCTATCGATGATCAACTGTTTGTAAAAATCTGTTGGAAAATATCTTCTTTTGTTTTTGTTATTTGCATTTCTTTTTGGGCTCCCTGCTGCATTCTTTATGATTTTTTTTTCATTCTCTATTCCCGACCACTGTTTCGGCCTCTTATTTTAGTATTTTTTTCAATTTTCATTGGGTTAATTAATAATATTTTTTGGGGGGGGGTCCATGCTTTTATTGACATGAACATGAATTCATTGAATAACGCAACTGAATATTATGTGCCACTTTCTTAA 960 0.4198 MKIQCAVCDKVEASVFCSADEAALCHSCDRTIHHANKLATKHPRFSLHYPTSQDFPLCDICQERRAYLFCQEDRALLCRECDVPIHRANEHTQKHNRFLLTGVKLSGTSLDPAASSTNCTHGSEGRNNARSRMNRPRSSVSNEENASNSSCKVEDNVASDTGSVSTSSISEYLIETIPGYCFEDLLDASFAPNGFCKNQNYDRHRRFRTKIFKLLGRVWFELRRFQNLNAIDDQLFVKICWKISSFVFVICISFWAPCCILYDFFFILYSRPLFRPLILVFFSIFIGLINNIFWGGVHAFIDMNMNSLNNATEYYVPLS* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0080 319 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 204 - -
Gso4g0080 319 SMART bboxneu5 53 100 IPR000315 GO:0008270
Gso4g0080 319 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gso4g0080 319 Gene3D Classic Zinc Finger 1 98 - -
Gso4g0080 319 MobiDBLite consensus disorder prediction 111 163 - -
Gso4g0080 319 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gso4g0080 319 CDD Bbox1_BBX-like 57 100 - -
Gso4g0080 319 CDD Bbox1_BBX-like 5 47 - -
Gso4g0080 319 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Gso4g0080 319 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 204 - -
Gso4g0080 319 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0080 Gso-Chr4 740055 741756 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso4g0080 zf-B_box 4.4e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0080 4 740055 741756 Gso4g0080 4 740055 741756 ECH
Gso4g0080 4 740055 741756 Gso11g0632 11 5634181 5637440 ECH
Gso4g0080 4 740055 741756 Gso6g0071 6 726602 728378 GST
Gso14g1826 14 50657713 50659544 Gso4g0080 4 740055 741756 PCT
Gso17g2161 17 41278153 41280013 Gso4g0080 4 740055 741756 PCT
Gso4g0080 4 740055 741756 Gso14g1826 14 50657713 50659544 PCT
Gso4g0080 4 740055 741756 Gso17g2161 17 41278153 41280013 PCT