Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2207 ATGCATGGCTACTACCGCTCACTGGGCAAACATGGTGTTCGATTTTTTTCTCTTGTCTTTTCTTTGATGCACAAATTCCGAGCTGTTCATTCTGAGCTGGTGAGATCCATGGAAGATATAGGTCCGAATTCATGCACAAGGCCAGTGACAGAGAAGAAAGCAAGACCCCAAGAACAATTGAATTGTCCAAGGTGCAGTTCAACCAACACAAAGTTCTGTTATTACAACAACTACAGCCTCACACAGCCAAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGAGGGTCTCTGAGAAACGTTCCCGTTGGAGGTGGCTCTAGGAAAAACAAGAGGGTCACCTCATCAAAGGTTCCTGACTTGAATCCACCAATTAGCCTCTCATCAGTCTCAGCCATTTCTTCCCAAAACCCTAAAATGCAAGGAGTCCATGACCTTAATCTGGCTTTTCCTGCAGCTATGGACAAGTATCATCATGGCACGTCTCCGTATGTTGAGATGCCAAAACTTGAAATTGGTGGTGATCACAGTACTAGTCATCATAGTCACCACCATAGCCATAGCCCTTCTTCTGCAGTTGAGCTACTACGGTCTGGCATGGATTCTAGGGGTTTGAATCCTTATGCTCCTAATTCCTTGATGTCAGGCTCAGATCATTCCCTTTATACACCTGGCTATCCCATGCAGGAAATTAAACCAAACCTTAGCTTTTCAGTTGATGATGGATTTGGAAATAGATCATATGGGGTTCAAGAGAATGGTGGAGGGAGGCTTTTGTTCCCTTTTGGAGACATCAAGCACCTTTCTGCAGGTCTTGAAGTGGAACACAATAAAGAACAAGGAAATAATTCAACTGGATATTGGACTGGTTGGTGA 882 0.4399 MHGYYRSLGKHGVRFFSLVFSLMHKFRAVHSELVRSMEDIGPNSCTRPVTEKKARPQEQLNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRVTSSKVPDLNPPISLSSVSAISSQNPKMQGVHDLNLAFPAAMDKYHHGTSPYVEMPKLEIGGDHSTSHHSHHHSHSPSSAVELLRSGMDSRGLNPYAPNSLMSGSDHSLYTPGYPMQEIKPNLSFSVDDGFGNRSYGVQENGGGRLLFPFGDIKHLSAGLEVEHNKEQGNNSTGYWTGW* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2207 293 MobiDBLite consensus disorder prediction 103 122 - -
Gso3g2207 293 ProSiteProfiles Zinc finger Dof-type profile. 60 114 IPR003851 GO:0003677|GO:0006355
Gso3g2207 293 PANTHER DOF ZINC FINGER PROTEIN DOF3.7 43 292 - -
Gso3g2207 293 Pfam Dof domain, zinc finger 58 114 IPR003851 GO:0003677|GO:0006355
Gso3g2207 293 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 43 292 IPR045174 GO:0003700|GO:0006355
Gso3g2207 293 ProSitePatterns Zinc finger Dof-type signature. 62 98 IPR003851 GO:0003677|GO:0006355
Gso3g2207 293 MobiDBLite consensus disorder prediction 170 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2207 Gso-Chr3 47240860 47242950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2207 52 292 C2C2-Dof Transcription Factor Family AT3G61850 49.057 4.60e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso3g2207 zf-Dof 6.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2207 - - gmx:100775598 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2167 19 50142971 50145051 Gso3g2207 3 47240860 47242950 GST
Gso3g2207 3 47240860 47242950 Gso7g0479 7 4749889 4752011 PCT
Gso3g2207 3 47240860 47242950 Gso16g0186 16 2117185 2119511 PCT
Gso7g0479 7 4749889 4752011 Gso3g2207 3 47240860 47242950 PCT
Gso16g0186 16 2117185 2119511 Gso3g2207 3 47240860 47242950 PCT