Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0957 ATGAGCTCTCATGCTTTAAACACCAATGTGAATGCTCTTGATCACTTTGAGATACCCGTAACGACGCCGTTTCAGGACGTTTCTGCATCGGTGCCGTCCATAGCAGCGTTCTGCCGGAGTTCTAGCTTCCGGAACATTTTCTTGACAGAGAATTGGGCGGAGCTGCCGTTGAAGGAGAACGACACCAATGACATGGTCATCTACGGTGCTTTGCGTGATGCTGCTGCCACCGGATGGTTCCCCGCCAATGGAAATGAGGTGAGTAATGTTAGTGTAGCTGTGAAAATGGAAAATGAGGGTCAAAATAGTAAAACTACAGCCGCGCGTGGCACTCGCACGCCTCCAAAGAAGGGGTTGAGCTACCGAGGCGTGCGGAGGAGGCCGTGGGGGAAGTATGCGGCGGAGATTAGGGACACTAAGAGGAATGGTGTGAGAGTGTGGCTTGGAACCTACGAAACCGCTGAGGATGCAGCTTTAGCTTATGATCGAGCTGCATTTAAGATGCGGGGCTCAAAAGCTAAGCTGAATTTTCCTCATTTAATTGGCTCGGATCATGAGCCAATTAAGGTTACGCTAAAGAAACATTGA 588 0.5 MSSHALNTNVNALDHFEIPVTTPFQDVSASVPSIAAFCRSSSFRNIFLTENWAELPLKENDTNDMVIYGALRDAAATGWFPANGNEVSNVSVAVKMENEGQNSKTTAARGTRTPPKKGLSYRGVRRRPWGKYAAEIRDTKRNGVRVWLGTYETAEDAALAYDRAAFKMRGSKAKLNFPHLIGSDHEPIKVTLKKH* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0957 195 MobiDBLite consensus disorder prediction 98 119 - -
Gso3g0957 195 SUPERFAMILY DNA-binding domain 121 179 IPR016177 GO:0003677
Gso3g0957 195 Gene3D AP2/ERF domain 120 179 IPR036955 GO:0003700|GO:0006355
Gso3g0957 195 PANTHER BNAC04G53270D PROTEIN 26 190 - -
Gso3g0957 195 CDD AP2 121 180 IPR001471 GO:0003700|GO:0006355
Gso3g0957 195 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Gso3g0957 195 PRINTS Ethylene responsive element binding protein signature 160 180 IPR001471 GO:0003700|GO:0006355
Gso3g0957 195 PANTHER DNA-BINDING DOMAIN 26 190 IPR044808 GO:0003700|GO:0009873
Gso3g0957 195 SMART rav1_2 120 184 IPR001471 GO:0003700|GO:0006355
Gso3g0957 195 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Gso3g0957 195 ProSiteProfiles AP2/ERF domain profile. 120 178 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0957 Gso-Chr3 33611092 33612194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0957 37 194 AP2-EREBP Transcription Factor Family AT2G44840 54.717 6.23e-60 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso3g0957 AP2 5.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0957 K09286 - gmx:100793366 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0970 7 12024340 12025265 Gso3g0957 3 33611092 33612194 GST