LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso3g0115	ATGGATATAGCTTTTCGGTTACCACAGTCAAATGTGGTATTGGATGGTTTGGATTCCTGCATTGTGTTTGGAGGGAGAGGTTTTGGTTGTGCTTTTCTCGGAAACTCGAGGACTATTCCGAAGGCTCGATTTAGTGGGGTGAACAAGATAGGTAGTAGGAGTAGTTCAAGAGTAGAATGCTTAGGAGATTTGAAAGTTTCGATTGGGAACAGGGGTTTGTCTTGGAAGAATAATAGACCTTTTAGGAAGAATAGGGAAATTTGGTCTAAGTGTCAGGGTAATGATTCTTTATCATATGTCAATGGCAATGGACGGAATGTTGGTAGGTTGGATGATGCGGATGAGGACTCCAATTCCAGTGTTGAATTGAGTGAACCTTTGGGAGAAGAAGAAAAAGGGCAAGGAGGGAGGAAAGAAGATGGGGGTGAAGTAGAAATAGAGGTACAAAGTGTGGATGAATTGAAGGAACTGTTGCAAAAGGCCATGAAAGAATTAGAAGCTGCTAGAGTTAACAGCATCGTTTTCGAGGAAAAGGTTAAGAAGATATCGGAGACTGCAATTTTTTTGCAGGATGAAGCTGCAAGTGCTTGGAACAATGTTACTTCTACCCTTGATGTCATCCAAGATATCGTGAGTCAAGAATTTGTTGCCAAAGAAGCTGTTCAGAAAGCAACTATGTCTCTTTCTCTTGCTGAGGCAAGGCTTCAAGTGGCCATGGACTCTTTGGAGGTTACAAAAGAAGTTTATGATACCCCACAAGGTTCTAACAAGAGTAATGGTGACGAAGATATAATTCAAGAGGAGAAAGAACTTTTGCTTGCTCAGGAGGATATCAGGGAATTCCAGACAAATTTAGCAAATTGTGAGAATGAGCTAAGATGCTTGCAATGTAGAAAGGAGGAGTTGCAGAATGAAGTGAACAAATTGCATGAAATTGCAGAACAGGCACAGCTGAAAGCAGCGAAAGCAGAAGAAGATGTTGCAAACATAATGCTTTTAGCAGAGCGAGCTGTTGCCGCTGAACTCGAGGCTACACAACACATGAATGATGCAGAGATTGCATTACAGAAATCAGACAAATCTGCCTCTAGTTTTAATGCTGATACCACAGACACTCTACAAGTACAAGATGTTGTGGCTATTTCTGAGGAGGAAGTGGTTCAAGGTTTATCTGGTGATGATGTTGATAAAAGAGAGCTTGATTACTTAGTCGATGGGGGGGAGCCTTTGCTTGCTATGCAATCACCAGAAAACACCAGCCAAAGTTTGGAAGACACGGTACAGTCTGATTATCTGAGTGATCATGAGAATGGCCAGTTAAGCTTAGACTCTCCTAAAGAAGCTGAAGTTGAAATAGGAAAGTCAAAGAATGTAGTTCAAACAAAAAAGCAGGAAACACAGAAAGATTCGATGAGAGATAATTCACTGTTGGCTCCCAAGACATCATTGAAGAAGTCTTCCCGATTTTTTCCAGCATCATTCTTCTCTTTTACTGCAGAAGAGACTGATTACACACCAGCATCAGTTTTCCATGGTCTTGTAGAGTCTGCACAGAAGCAACTACCCAAGCTGGTTGTTGGGTTATTGTTAATTGGAGCAGGGCTTGTGCTCTACACAAATAGAACAGAGAGGAGTGCCCAGCTGCTTCAGCAGCCAGAAGTCATTGCAACCACTGTTGAAGAAGTTTCTTCAACTGCAAAGCCATTGGTTAGAGAGCTTCAGGAGCTTCCCAGGAGAATTAAGAATATTATTGCATCATTACCTGATCAAGAGGTGAATGAGGAGGAAGCCTCCCTCTTTGACATGCTCTGGTTACTACTTGCAAGTGTTGTATTTGTGCCAATATTTCAAAAGATTCCTGGAGGAAGTCCTGTTCTTGGCTACTTGGCTGCTGGTATCTTGATTGGGCCTTATGGTCTCTCTATCATTCGTCATGTTCATGGGACAAAAGCAATAGCTGAATTTGGAGTTGTTTTCCTGTTATTCAATATTGGCCTGGAGCTCTCGGTTGAAAGGCTTAGTTCAATGAAGAAATATGTCTTTGGATTAGGCTCTGCCCAGGTTTTGGTGACTGCTGTAGTTGTCGGCTTGGTGGCTCATTATATTTGTGGTCAAGCTGGTCCTGCTGCTATTGTCATTGGGAATGGCCTGGCATTATCATCAACTGCTGTTGTTCTGCAGGTTTTACAGGAGAGAGGTGAGAGCACATCACGGCATGGAAGGGCTACATTTTCTGTTCTGCTTTTTCAGGATTTGGCTGTTGTTGTCTTGCTAATACTCATACCTCTTATTTCACCTAATTCTTCCAAAGGAGGGGTTGGTTTCCAAGCCATTGCTGAAGCTCTTGGTCTGGCTGCTGTCAAGGCAGTGGTTGCTATTTCAGCCATAATTGCAGGTGGACGATTGCTCCTTCGACCTATATATAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCTGCCAATACACTCTTTGTTATTCTTGGGACCAGCCTTCTCACAGCCAGGGCTGGACTTTCCATGGCATTGGGGGCATTTTTGGCTGGTTTACTACTGGCAGAAACTGAGTTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTACTGGGTCTCTTCTTTATGACGGTTGGAATGTCAATTGATCCAAAACTTCTTGTTTCAAACTTTCCAGTCATTACAGGGGCCCTGGGACTCTTGATATTTGGCAAAACTTTGTTGGTTTCTTTAATCGGAAGAGCTTTTGGTATTTCTCTCATTTCTGCTATCAGAGTGGGTCTTCTTCTTGCTCCGGGAGGAGAATTTGCATTTGTGGCTTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTTCCCAGTTGTCCTCTTTACTGTTTCTTGTTGTGGGAATTTCAATGGCTCTCACTCCATGGCTAGCTGAAGGAGGTCAGCTCCTTGCTTCCCGTTTTGAGTTACACGATGTTCGAAGTTTATTACCTGTGGAAAGTGAGACAGATGATCTGCAAAATCATATCATTATTTGTGGATTTGGGCGAGTTGGGCAGATCATTGCACAACTTCTTTCTGAGCAACTTATTCCTTTTGTTGCACTAGATGTGAGAAGTGATAGAGTGACAATTGGACGTTCCCTGGATCTCCCTGTGTACTTTGGAGATGCTGGTAGTCGAGAGGTCCTACACAAGGTTGGGGCTGAAAGGGCAAGTGCTGCTGCGGTAACTCTAGATTCCCCTGGAGCAAATTATAGAACAGTTTGGGCTCTGAGCAAGCACTTCCCAAACGTGAAGACTTTTGTTCGTGCTCATGATGTTGATCATGGATTAAATTTAGAAAAGGCTGGAGCTACTGCTGTTGTCCCAGAGACCTTGGAACCAAGTCTTCAACTAGCAGCTGCCGTGCTTGCTCAGGCTAAACTTCCTACATCAGAGATTGCAGCGACTATAAATGAATTCAGATCCCGCCATCTTTCTGAGCTCACTGAACTATCCGAAACAAATGGAACTTCTTTTGGATATGGATATAATAGAACTACGAGCAAAGCCAAATCTCATTCCCCAGATTCATCAGATGATACTCAAGTCTCTGAAGGTAAACTGGCGACATGA	3612	0.4291	MDIAFRLPQSNVVLDGLDSCIVFGGRGFGCAFLGNSRTIPKARFSGVNKIGSRSSSRVECLGDLKVSIGNRGLSWKNNRPFRKNREIWSKCQGNDSLSYVNGNGRNVGRLDDADEDSNSSVELSEPLGEEEKGQGGRKEDGGEVEIEVQSVDELKELLQKAMKELEAARVNSIVFEEKVKKISETAIFLQDEAASAWNNVTSTLDVIQDIVSQEFVAKEAVQKATMSLSLAEARLQVAMDSLEVTKEVYDTPQGSNKSNGDEDIIQEEKELLLAQEDIREFQTNLANCENELRCLQCRKEELQNEVNKLHEIAEQAQLKAAKAEEDVANIMLLAERAVAAELEATQHMNDAEIALQKSDKSASSFNADTTDTLQVQDVVAISEEEVVQGLSGDDVDKRELDYLVDGGEPLLAMQSPENTSQSLEDTVQSDYLSDHENGQLSLDSPKEAEVEIGKSKNVVQTKKQETQKDSMRDNSLLAPKTSLKKSSRFFPASFFSFTAEETDYTPASVFHGLVESAQKQLPKLVVGLLLIGAGLVLYTNRTERSAQLLQQPEVIATTVEEVSSTAKPLVRELQELPRRIKNIIASLPDQEVNEEEASLFDMLWLLLASVVFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHYICGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAVVAISAIIAGGRLLLRPIYKQIAENQNAEIFSANTLFVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVSNFPVITGALGLLIFGKTLLVSLIGRAFGISLISAIRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMALTPWLAEGGQLLASRFELHDVRSLLPVESETDDLQNHIIICGFGRVGQIIAQLLSEQLIPFVALDVRSDRVTIGRSLDLPVYFGDAGSREVLHKVGAERASAAAVTLDSPGANYRTVWALSKHFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPTSEIAATINEFRSRHLSELTELSETNGTSFGYGYNRTTSKAKSHSPDSSDDTQVSEGKLAT*	1204

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso3g0115	1203	PANTHER	K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED	1	1202	-	-
	Gso3g0115	1203	MobiDBLite	consensus disorder prediction	452	474	-	-
	Gso3g0115	1203	MobiDBLite	consensus disorder prediction	452	470	-	-
	Gso3g0115	1203	Gene3D	-	1003	1167	-	-
	Gso3g0115	1203	MobiDBLite	consensus disorder prediction	125	142	-	-
	Gso3g0115	1203	MobiDBLite	consensus disorder prediction	108	142	-	-
	Gso3g0115	1203	Pfam	Sodium/hydrogen exchanger family	604	975	IPR006153	GO:0006812\|GO:0015299\|GO:0016021\|GO:0055085
	Gso3g0115	1203	ProSiteProfiles	RCK N-terminal domain profile.	1007	1129	IPR003148	GO:0006813
	Gso3g0115	1203	PANTHER	K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC	1	1202	-	-
	Gso3g0115	1203	MobiDBLite	consensus disorder prediction	1169	1203	-	-
	Gso3g0115	1203	Pfam	TrkA-N domain	1008	1121	IPR003148	GO:0006813
	Gso3g0115	1203	Coils	Coil	144	171	-	-
	Gso3g0115	1203	TIGRFAM	2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family	606	886	IPR004771	GO:0006812\|GO:0008324\|GO:0016021
	Gso3g0115	1203	MobiDBLite	consensus disorder prediction	1169	1184	-	-
	Gso3g0115	1203	Gene3D	-	595	982	IPR038770	-
	Gso3g0115	1203	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	1004	1145	IPR036291	-
	Gso3g0115	1203	Coils	Coil	264	333	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso3g0115	Gso-Chr3	1382630	1395042	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso3g0115	91	1202	Inorganic Solute Cotransporters	AT4G00630	70.239	0.0	1409

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso3g0115	-		-	gmx:100800772	2175.21

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso7g0644	7	6849171	6860141	Gso3g0115	3	1382630	1395042	GST
	Gso18g1988	18	52480774	52495166	Gso3g0115	3	1382630	1395042	PCT
	Gso9g2159	9	45863348	45876985	Gso3g0115	3	1382630	1395042	PCT
	Gso3g0115	3	1382630	1395042	Gso18g1988	18	52480774	52495166	PCT
	Gso3g0115	3	1382630	1395042	Gso9g2159	9	45863348	45876985	PCT