Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0070 ATGTCTCAGACAGAGAAGGATCCGGGTATCAGGCTATTTGGAAGGAAGATTCCGGTGCCGGAATGTCAGATTCCGGCCAACTCTGGACCCAAGGATGCTTGCAGCAGCATAATGAAAACAGAACTGGGAATACCCAGTGAATGTGGAGAAAACACTGAGCAACAAGAAAATTCTTCTGATTCAAGGGATAGTAAACAGGAGTCCCAACATAAATTGCAGGAAAATGAGCCGATAGTGAATCCCAAGCCTGCGGAAGATGATATGGAGACTGGTAGCTCAGATCAAGATAAGGTCTTGAAGAAACCAGACAAGATTCTTCAGTGTCCACGATGCAACAGTTTGGACACTAAGTTTTGTTATTTCAATAACTATAATGTCAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACGATGAGAAATGTTCCGATAGGTGCTGGTCGACGGAAGAATAAGCACCTAGCCTCTCAATACCGACACATTATAGTAACCTCTGATGGAATTCCAACCTCCAGGCTAGAAACCACGGACTCGTCTGGTCTCCAACAGCAGCATATCGCAAGTCTTGAATCCTCAGTTCCTTTCAGGTCTTCAGCAGATAACGGCACCGTGTTGAAATTTGGTCCCGATATCCCTCTTTGCGAATCGATGGATTCAATGCTTAATCTTAGAGACCAGAGAAGATGTGTTGATGCAAGTTCTATCAGCTGTGTAGAGTATAGAGGGGAACCATCCTTATATGGATCTTCAGTGACAACTAATGGTGCTCAAGGAAGTGAATTATCAGAACATAGTCCATCAAATTGGCTGCAATGTTACCCTGTTCCTCCATGGGTATTACCTTATCCAGGTTGGAATAATGTGAATTCCATGGAAGCGGTTCACCGATCTTCGGCACCAATGTGCAATCCATACAATAACACTGGTCCTGCAGCAATGCAATGGTGTCCCACACCAATGGTTGCAATTCCTGGCATGTGCCCACCAAGCATTCCTTTGCAATTTGTACCACCATCATACTGGAGTGGCACACAACTTTGGAATGCTGGAACCGGGACAGTGTCAATAGGATCCAATGCTTGCCTTTCGCCGTCTTCCTCCACTAGTAACAGTTGCTGCTCAGGCAATGGTTCACCAACACTTGGAAAGCACACTAGAGATACAGTTTGCACCAATGAAGAGAAATCCGAGAAGTGTGTTTCGGTTCCAAAGACCATTAGAATTGATGCCCCAAATGAGGCCTCAAAAAGTCCTATAAGAGCTACATTAGCTATCAAGCCTGATATGCAGCAATTTGTATCAAATGGTGATATTTTGAAAAAAAATGAACCAAAAGAAGGAAAAGATCGCATGTTGGGTGCCTCTCAAATCTTGGAAGCCAATCCGGCAGCTATTTCTCGTGCTCATGCATTTCAGGAGGGCTTATAG 1449 0.4451 MSQTEKDPGIRLFGRKIPVPECQIPANSGPKDACSSIMKTELGIPSECGENTEQQENSSDSRDSKQESQHKLQENEPIVNPKPAEDDMETGSSDQDKVLKKPDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRHIIVTSDGIPTSRLETTDSSGLQQQHIASLESSVPFRSSADNGTVLKFGPDIPLCESMDSMLNLRDQRRCVDASSISCVEYRGEPSLYGSSVTTNGAQGSELSEHSPSNWLQCYPVPPWVLPYPGWNNVNSMEAVHRSSAPMCNPYNNTGPAAMQWCPTPMVAIPGMCPPSIPLQFVPPSYWSGTQLWNAGTGTVSIGSNACLSPSSSTSNSCCSGNGSPTLGKHTRDTVCTNEEKSEKCVSVPKTIRIDAPNEASKSPIRATLAIKPDMQQFVSNGDILKKNEPKEGKDRMLGASQILEANPAAISRAHAFQEGL* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0070 482 MobiDBLite consensus disorder prediction 56 72 - -
Gso3g0070 482 Pfam Dof domain, zinc finger 103 160 IPR003851 GO:0003677|GO:0006355
Gso3g0070 482 MobiDBLite consensus disorder prediction 80 98 - -
Gso3g0070 482 ProSitePatterns Zinc finger Dof-type signature. 108 144 IPR003851 GO:0003677|GO:0006355
Gso3g0070 482 PANTHER CYCLIC DOF FACTOR 3-LIKE 1 480 - -
Gso3g0070 482 PANTHER CYCLIC DOF FACTOR 2 1 480 IPR045174 GO:0003700|GO:0006355
Gso3g0070 482 MobiDBLite consensus disorder prediction 1 98 - -
Gso3g0070 482 ProSiteProfiles Zinc finger Dof-type profile. 106 160 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0070 Gso-Chr3 760149 763190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0070 7 480 C2C2-Dof Transcription Factor Family AT5G39660 35.316 3.20e-67 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso3g0070 zf-Dof 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0070 - - gmx:100813787 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0070 3 760149 763190 Gso3g0070 3 760149 763190 ECH