Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2143 ATGCCCCTTCTTCTTCTCATTTCATCTCTCTGTCACTTTCATTCCTCTTCCTCCCTTTTCCCTTCTTCCCTCTCACACAACATCATTATTGCCTTTTCATCCTTAATTATGGCTTCTTCTTCAGATGTTAACCATCTTTCACATCCTTGCATCTATGGGGATTATAGTTCTTCTCGCTCAGAGAGAAAGTCCGGTTTCATGAAATGGCTTAGTAAGCTTTTCAGAGGTGGGTCCAATAGAGGAAGGGGCTGTCGTCACCTGCATGAGCCAGCAGAGGAAAGCATAGTTCGGGGTGCTCCATCTAGAGCTTTGGATGATCGTGGTAGAGCTCAGAAGGAGAAAGAGGATTTAGGCCATGCAATGGCACTTTCTTCAGCCGAAGATTTAAAGAGACCAAACGGATATAATTGGGGAGAAGACACCGGTGATGATTACTCAAAGGCACCTCACGATACCCTTAACTCATCTGCACACCCTCCATTTGCCCCTACACCATTTTATCCCCATCCCCACAAATATAGTTTCCCATTGAACAGAAGAGTATGTGGTGGCTGCAACCAAGAGATAATGTATGGAAATTGTTTGGGCTGCATGGATACTTATTTTCACCCAAATTGTTTTCGCTGTCACTCTTGTGGTTACCCCATTACCGAGCGCGAGTTTTCCTTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTTAAAGAGCTGACTCATCCTAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTTTTGGTCGCAAAAGTATTGTCCATCTCATGAGTATGATAATACAGCTCGCTGCTGTAGTTGTGAAAGATTGGAGCCTCTGAACATAAAATACTATAGACTAGAAGATGGACGGAGTTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGATACCGGTGATTGCCAACCCCTATACCATTCTATCAGAGACTACTATGAAGGAATGCAGATGAGAATAGATCAACAAGTTCCCATGCTTCTAGTTGAGAGGGAAGCACTGAATGAAGCTATTGTAGGGGAGAAAAATGGTTTTCATCACTTACCGGAAACAAGAGGTTTATGCCTTTCAGAAGAGCAGACTGTCACCAGTATACATAGAAGACCAAGAATTGGAGGCCATCGACTAATAGGGATGAGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTCACAGCAATTCTTGTTCTATATGGTCTTCCTAGGTTACTCACAGGTGCAATACTTGCCCATGAGTTGATGCATGCATGGCTACGCCTTCATGGTTATCGCAACCTTACTCCCGAAGTAGAGGAAGGCATTTGTCAGGTTCTTTCGTATATGTGGCTTGAGTCAGAAGTAATGCCTAGCTTTCAAAACATGCCATCAACATCCACAAGTGCTGGTTCTTCCTACTCTTCTTCCTCCTCCTCCTCCTCCTCGTCGTCCTCCTCCTCCTCAAAGAAGGGTGCAAAATCTCATGTTGAAAATAAATTGGGTGAATTTTTCAAGAATCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCTGCTAATGAAGCTGTCAATAAATATGGTTTGCGTAGAACACTTGACCATATTCATTGGACTGGTTTTTTCCCAGTGGAAAAAGAACGCAAGTTCTCTAAGTATGGATAG 1701 0.4303 MPLLLLISSLCHFHSSSSLFPSSLSHNIIIAFSSLIMASSSDVNHLSHPCIYGDYSSSRSERKSGFMKWLSKLFRGGSNRGRGCRHLHEPAEESIVRGAPSRALDDRGRAQKEKEDLGHAMALSSAEDLKRPNGYNWGEDTGDDYSKAPHDTLNSSAHPPFAPTPFYPHPHKYSFPLNRRVCGGCNQEIMYGNCLGCMDTYFHPNCFRCHSCGYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPLNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQVPMLLVEREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLHGYRNLTPEVEEGICQVLSYMWLESEVMPSFQNMPSTSTSAGSSYSSSSSSSSSSSSSSSKKGAKSHVENKLGEFFKNQIANDSSPAYGGGFRAANEAVNKYGLRRTLDHIHWTGFFPVEKERKFSKYG* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2143 566 MobiDBLite consensus disorder prediction 471 501 - -
Gso2g2143 566 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 176 207 - -
Gso2g2143 566 CDD LIM_DA1 182 234 - -
Gso2g2143 566 MobiDBLite consensus disorder prediction 471 500 - -
Gso2g2143 566 Gene3D Cysteine Rich Protein 177 241 - -
Gso2g2143 566 Pfam LIM domain 182 235 IPR001781 -
Gso2g2143 566 PANTHER PROTEIN DA1-RELATED 2 56 556 IPR045218 -
Gso2g2143 566 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 56 556 - -
Gso2g2143 566 SMART lim_4 181 233 IPR001781 -
Gso2g2143 566 Pfam Protein DA1 331 550 IPR022087 -
Gso2g2143 566 ProSitePatterns LIM zinc-binding domain signature. 182 216 IPR001781 -
Gso2g2143 566 ProSiteProfiles LIM domain profile. 180 240 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2143 Gso-Chr2 46067020 46072300 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso2g2143 DA1-like 7.2e-102 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1829 14 50679319 50692809 Gso2g2143 2 46067020 46072300 GST
Gso18g0298 18 2691419 2696582 Gso2g2143 2 46067020 46072300 PCT
Gso13g1322 13 28644084 28649275 Gso2g2143 2 46067020 46072300 PCT
Gso2g2143 2 46067020 46072300 Gso18g0298 18 2691419 2696582 PCT
Gso2g2143 2 46067020 46072300 Gso13g1322 13 28644084 28649275 PCT