Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1836 ATGGAGCCATCAGCAATGTACGGACCCTCCCAGCCCCTGAACATCCCCTCGCGGATCGGCGCTGGCGAAAGAGACGACGGCTCCGGCAACGAGCCCGCCGTCGACGGCCACCACCACCACATTCAGTACGAAACGCACGCGCTCGATGACGGTGCCGCCGGTGGCGCCGTGGTTGTCGAGGATGTTACGTCGGACGCGGTCTATGTCTCCGGCGGTGGAGGCCCCGAGGAGTCCAGCCAGCTTACGCTGTCGTTTCGTGGCCAAGTTTACGTCTTCGATGCCGTTACGCCTGATAAGGTTCAAGCGGTGTTGTTACTTTTGGGTGGATGTGAACTATCTTCGGGTGGTTCGCCATGTGTGGATCCTGGGGCTCAACAGAATCAAAGGGGTTCAATGGAATTTCCTAAATGTAGTCTACCACAACGAGCTGCCTCATTAGATAGGTTCAGGCAGAAGAGGAAAGAGCGATGCTTTGATAAAAAAGTGAGATATAGCGTACGGCAAGAAGTTGCGCTCAGGATGCATCGTAACAAGGGTCAGTTTACTTCATCTAAGAAACAAGATGGAGCTAATAGTTATGGTACTGACCAAGATTCAGGACAGGATGATAGTCAATCTGAAACCTCATGTAAACATTGTGGCACTAGTTCAAAATCCACCCCAATGATGCGGCGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGGGGTGCTTTGAGAGACCTTTCTAAGAGAAATCAGGAACACTCTCTTCCACCAGTTGAACAGGTTGATGGAGGTAATGACCCAGACTGTCGGACTGCCGCTGCCGACCCTGCACAAAACAATCTTGCTGCTTTCTCAGAGCCTGTTAATCCAGCTTTGGTAGCTGATCGTAAGGTTTTCCAATCTCAGAAAATGTTGGAGTAG 933 0.5145 MEPSAMYGPSQPLNIPSRIGAGERDDGSGNEPAVDGHHHHIQYETHALDDGAAGGAVVVEDVTSDAVYVSGGGGPEESSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSSGGSPCVDPGAQQNQRGSMEFPKCSLPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSYGTDQDSGQDDSQSETSCKHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNQEHSLPPVEQVDGGNDPDCRTAAADPAQNNLAAFSEPVNPALVADRKVFQSQKMLE* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1836 310 Pfam tify domain 75 108 IPR010399 -
Gso2g1836 310 Gene3D - 200 258 IPR013088 GO:0006355|GO:0008270
Gso2g1836 310 ProSiteProfiles GATA-type zinc finger domain profile. 204 255 IPR000679 GO:0006355|GO:0043565
Gso2g1836 310 SMART GATA_3 204 257 IPR000679 GO:0006355|GO:0043565
Gso2g1836 310 ProSiteProfiles Tify domain profile. 74 109 IPR010399 -
Gso2g1836 310 MobiDBLite consensus disorder prediction 175 228 - -
Gso2g1836 310 SMART tify_2 74 109 IPR010399 -
Gso2g1836 310 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 206 256 - -
Gso2g1836 310 PANTHER GATA TRANSCRIPTION FACTOR 25 23 277 - -
Gso2g1836 310 PANTHER GATA TRANSCRIPTION FACTOR 28 23 277 IPR045280 GO:0006355
Gso2g1836 310 ProSitePatterns GATA-type zinc finger domain. 210 237 IPR000679 GO:0006355|GO:0043565
Gso2g1836 310 MobiDBLite consensus disorder prediction 1 36 - -
Gso2g1836 310 Pfam GATA zinc finger 210 245 IPR000679 GO:0006355|GO:0043565
Gso2g1836 310 ProSiteProfiles CCT domain profile. 142 184 IPR010402 GO:0005515
Gso2g1836 310 MobiDBLite consensus disorder prediction 183 223 - -
Gso2g1836 310 CDD ZnF_GATA 209 255 IPR000679 GO:0006355|GO:0043565
Gso2g1836 310 MobiDBLite consensus disorder prediction 253 272 - -
Gso2g1836 310 Pfam CCT motif 142 184 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1836 Gso-Chr2 42341202 42345705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1836 75 283 Tify Gene Family AT4G24470 63.981 8.64e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso2g1836 CCT 2.4e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1836 - - gmx:100776838 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1545 14 47036105 47041048 Gso2g1836 2 42341202 42345705 GST
Gso2g1836 2 42341202 42345705 Gso4g0818 4 8559739 8564680 PCT
Gso2g1836 2 42341202 42345705 Gso6g0824 6 7817483 7823310 PCT